NONHSAT105229
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105229 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
993 nt |
Genomic location |
chr5-:173502231..173513634 |
Exon number |
4 |
Exons |
173502231..173502720,173509422..173509630,173511102..173511161,173513401..173513634 |
Genome context |
|
Sequence |
000001 CTAGATCTCA CCGACCTGTT GAGAGGAAAG GAGCCAACCT GGCCTGGTGA CCTTCTCTGT GCAAGcaggg agcaggcaca 000080
000081 caccaccaat gagtgaagaa ggctgctgtg gcatgctcgg gacctagagg gaacctgcct cattgacagg ggacagcagc 000160 000161 tgcacagctc cagacaatcg ttgtcaagga cgggaatgag attctaacat ggctgatctg atttttcaag aaagatgaga 000240 000241 aaaATAGTAA TGGAGGAAAT GGAAGGAAAA AGGATGGCCA TAAGTTGGAG GCAGgtgaaa gacccaaatt catggaagag 000320 000321 aagtgagtca cacagggagc cagtggcaga gccaCACCCC ACAGAGCAAT CAACATGCTC TACTCTGCAG ACCTGCAACA 000400 000401 GGGAGGGAAG CCAGACTCTG ATGCAAGAAG GAAAGACCAT GTGCTGGCTC AGTGTGTGCA GCCTGGACTG AGCTACTGAA 000480 000481 CTCTAAATCC AAGGATGACT AATGAGCAAA GGCCCAGAGA GCGAGGAAGC CAGGAGATGA GCTCTCCCAC CTTGTGACTG 000560 000561 GGATTGCGGA GCAGGTGGCA TGACAGACCC TGGGGAAAAC GGCATCTCTT TCTTGGGAAA TTGTCGCTTC TCTTTTTCCC 000640 000641 TTTTGGATCA ACACATTTCA GGACTCGGCC AAACAGTGTA TTTAAAGAGA AAAAAGAGGA CGAGAGAGCC AACGCAAAAT 000720 000721 TAACCTAACA CTCGGCAAAT AACAGGGATC TGCAGCAAAG TTTTAGTATT CTTGCAACCA CATTTCAGTT TAGCTTAATT 000800 000801 TAGCCAATTC CCCAAATGTG CAGGGTTTCC CAATTTGGAA GATGGTATAG ATAAAAGAAT ATACGTGTAT GCATGCACAC 000880 000881 ACATACACAT AACCACACAT CGGTGCACAT ACCGCTctgg gtcagaaaac cccgactctg cccccttatt ggctgtatga 000960 000961 ccccgagtgg cttaattaat catgctgatc ccc |
Predicted Small Protein
Name | NONHSAT105229_smProtein_374:478 |
Length | 35 |
Molecular weight | 3748.1646 |
Aromaticity | 0.0588235294118 |
Instability index | 42.9 |
Isoelectric point | 6.50286865234 |
Runs | 5 |
Runs residual | 0.0390915860015 |
Runs probability | 0.0283695460166 |
Amino acid sequence | MLYSADLQQGGKPDSDARRKDHVLAQCVQPGLSY |
Secondary structure | LLEELLLLLLLLLLHHHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |