NONHSAT105339
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105339 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
928 nt |
Genomic location |
chr5+:175735016..175736018 |
Exon number |
2 |
Exons |
175735016..175735614,175735690..175736018 |
Genome context |
|
Sequence |
000001 gaacaaaatg aaatactatt tagtaattaa aagcaatgaG CTGGGCCAAG ATGGCAGTGC AGGTGGTGCA GGCGGTGCAG 000080
000081 GCAGTTCATC TAGAGTCTGA CACTTTCCTT GTTTGTCTCA ACCATGCTCT GAGCACAGAG AAGGAGGAAG TGATGGGGCT 000160 000161 GTGGATAGGG GAGTTGAACA ATGATACAAG GAGTGACTCC AAATTTGCAT ATACTGGAAC TGAAATGCGC ACAGTTGCTG 000240 000241 AAAAGGTTGA TGCCATCAGA ATTGTTCACA TTCGTTCTGT CATCATCTTA ACGACGTTCT GATAAGAGGA AGGACCAAGT 000320 000321 AGAAATTTCA CCAGGGCAGC TGTCTGCAGC TTCAACAGAG GCAGAGAAGT TGGCTGAACT GACAGGCCAC CCCATGAGAG 000400 000401 TTGTGGGCTG GTATCATTCC CATCCTCATA TAACTGTTTG GCCTTCACAT GTTGATGTTC GCACCCAAGC CATGTACCAG 000480 000481 ATGATGGATC AAGGCTTTGT AGGACTTATT TTTTCCTGTT TCATAGAAGA TAAGAACACA AGGGCTGGCC GGGTACTCTA 000560 000561 CACTTGCTTC CAATCCATAC AGGCCCAAAA GAGTTCAGAg TATGAGAGAA TCGAAATCCC AATCCATATT GTACCTCATG 000640 000641 TCACTATCGG GAAAGCGTGC CTTGAATCAG CAGTAGAGCT GCCCAAGATC CTGTGCCAGG AGGAGCAGGA TGCATATTGG 000720 000721 AGGATCCACA GCCTTACACA TCTGGACTCA TAACCAAGAT CCATAATGGC TCAGTGTTTA CCAAGAATCT GTGCAGTCAG 000800 000801 ATGTCAGCAG TCAGCGGGCC TCTTCTACAG TGGTTGGAGG ACAGACTGGA GCAAAACCAA TAGCATTTGC AGGAATTGCA 000880 000881 ACAAGAAAAG GAAGAGCTTA TGCAAGAACT TTCTTCTCTG GAATAAAG |
Predicted Small Protein
Name | NONHSAT105339_smProtein_35:301 |
Length | 89 |
Molecular weight | 9895.3114 |
Aromaticity | 0.0681818181818 |
Instability index | 43.0715909091 |
Isoelectric point | 5.48065185547 |
Runs | 15 |
Runs residual | 0.0390909090909 |
Runs probability | 0.0418595065654 |
Amino acid sequence | MSWAKMAVQVVQAVQAVHLESDTFLVCLNHALSTEKEEVMGLWIGELNNDTRSDSKFAYT GTEMRTVAEKVDAIRIVHIRSVIILTTF |
Secondary structure | LLHHHHHHHHHHHHHHHHHHLLLEEEEELLLLLLLHHHHHHHEEEELLLLLLLLLLEEEL LLEEHHHHHHLLLEEEEEEEEEEEEEEL |
PRMN | - |
PiMo | - |