NONHSAT105455
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105455 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1371 nt |
Genomic location |
chr5-:177139121..177143367 |
Exon number |
4 |
Exons |
177139121..177140171,177140749..177140917,177141050..177141178,177143346..177143367 |
Genome context |
|
Sequence |
000001 TGAAGATTGG AATTCTTCAT ATGTAAAAAG AGAAGAGAAA GACATTCTTG ATTTTGGTGA CTAGAGTTGT AGATGCTGGA 000080
000081 AGCTTTGCCA CTAACATTGA TGAACCAGAT GCATGTCACC AGCCCATCAC GGTGATTCTT AATGCCGTTA AGGCACCATG 000160 000161 GGCCGGCACT GCCACGTTTT CCAAGGAACC TGCCAGAGCT CCTGCGGAAG CTGCTCCTCG GGCGATGGAG TCCCTTTGCT 000240 000241 GCTAGGCCCT TCTTCAGTCA CCACAGGATG CCTGCCATTC ATGAACAGGA AGGAGAGGAC GGGCTTTGAA TAAAAAACAG 000320 000321 GATCCAGGAA ATATTTGTGA GGCCATTTGG ACTTCAGTGT GAAATGGTGT TAAAAGATGA AGTCATTTAT TCAAGAAGTA 000400 000401 AACCTCTGCC ACCTGGACTG TGCTCAGACA TTTCATTGAT TTTGTTTAAT AAACATTTTC TGGCTTTGGG AGGTGTCTCT 000480 000481 CTTGGTAGAG CACAGTGTCA AAGATGGACA AGATGGACAC ATAGTCCATT ATTTGGTATT GTTTGTGTAT GGGAGCGGAC 000560 000561 CACAAATTAA TGTTTGGAGA ACAATTTTGT CATAACACAC TGTTGAGGCT CAGTTGTACA GAACTGGAAA AGTCTTTCAG 000640 000641 CTTGGCACAT GTCCTGATTC AGCCTTTGTT TAACATACAT TCCAATCCGG ATTCTATCTT CACTGGCTAC AAAGACCACC 000720 000721 TGATACGTGC ACCACGACAC AGGAGCTGCT GGAGAGGGGG TAGTGTTATC ACCTCAAACC CACAGCCATA Tttttcaaaa 000800 000801 gccagcttag agagaggtgt actgatagct gcatagagaa catgcagtcc atccattctt cCCAGTGATG TACATTTCTC 000880 000881 AATCAGTAAC CACGTGGTAT ACCAGCCTTG AGTGTCACAT CTCCCAACCA TACCAAATGG ATCACCTAAC TGGAGGTGGG 000960 000961 GGGGGCCCCT CAGAAATGAG ATTTCGTATT TACTGTAAAA TTGCCTTAtt ttttcttttg aggtggagtc tcactctgtt 001040 001041 gcctgggctg gagtgcaatg gtgtgatcac tgctcactgc aacctccgcc tcctgggttc aagcagttct cctgcctcag 001120 001121 cctcccaagt agctgcaatt acaggcgcat gccaccactc ccagcaaatt tttatatttt tagtggagac agggtttcac 001200 001201 catgttggcc aggctggtct caaactcctg acctcaggtg atctgcccac cttggcctcc caaagttctg ggattaaagg 001280 001281 tacgagccac cgcaactggc Tgagaatctt tttatttgct gatttgtctc ttgtgtattt tctttgttca gatgtctctt 001360 001361 cagatctttt t |
Predicted Small Protein
Name | NONHSAT105455_smProtein_548:835 |
Length | 96 |
Molecular weight | 10711.2025 |
Aromaticity | 0.0947368421053 |
Instability index | 49.3694736842 |
Isoelectric point | 8.98773193359 |
Runs | 17 |
Runs residual | 0.0498963945296 |
Runs probability | 0.0373920633437 |
Amino acid sequence | MGADHKLMFGEQFCHNTLLRLSCTELEKSFSLAHVLIQPLFNIHSNPDSIFTGYKDHLIR APRHRSCWRGGSVITSNPQPYFSKASLERGVLIAA |
Secondary structure | LLLLLLEELLHHHHHHHHHHHLLHHHHHLLLHHHHHHHHHHHLLLLLLLLLLLLLHHHHL LLLLLLLLLLLEEEELLLLLLLLLLHHHLLLEEEL |
PRMN | - |
PiMo | - |