NONHSAT105457

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT105457

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1829 nt

Genomic location

chr5-:177139134..177145570

Exon number

7

Exons

177139134..177140171,177140749..177140917,177141070..177141178,177143346..177143416,177144164..177144297,177145148..177145334,177145450..177145570

Genome context

Sequence
000001 ATTTAGAGGT TTATTTCGAA CAACTGGCAA TTCCAGGAAT GATGGAATAA AGCATACGAA GTAGAAGGAC TGGAACCTCC 000080
000081 AGAAAAAGTA CTTTAAGTTA CCTACAGGTG ATCCTAGTCA GGTATGAATT GATAAGAAAT GCCTGCACCT TCCCTCCTTC 000160
000161 CTATCTTTCC CTTGcctaca gaaaattaaa aggcaaaaca atggacatct acatattctt cattcagatc aaccagtggc 000240
000241 tagcatttgc caccttttgc agtttctttc tctttccata agtactttct tctctgaatc atttgaaaGC AAATGAAAAC 000320
000321 AGTAGCCTAA AGTGTCAGTT TCAACCCGAA AATAACAGCT CTGATTTCTC ATGGCTCACA CTCGTCTGAA ATGACTCGGG 000400
000401 TAGAGGCTGA GGAAGGCTGT GTTGTTTGTC TACCTGGGAC TACACCTACT GAAAGAAGTT CTCAAGTTCT GATTGAGTTC 000480
000481 TAAAATTCTT TTGAAGATTG GAATTCTTCA TATGTAAAAA GAGAAGAGAA AGACATTCTT GATTTTGGTG ACTAGAGTTG 000560
000561 TAGATGCTGG AAGCTTTGCC ACTAACATTG ATGAACCAGA TGCATGTCAC CAGCCCATCA CGGGCACCAT GGGCCGGCAC 000640
000641 TGCCACGTTT TCCAAGGAAC CTGCCAGAGC TCCTGCGGAA GCTGCTCCTC GGGCGATGGA GTCCCTTTGC TGCTAGGCCC 000720
000721 TTCTTCAGTC ACCACAGGAT GCCTGCCATT CATGAACAGG AAGGAGAGGA CGGGCTTTGA ATAAAAAACA GGATCCAGGA 000800
000801 AATATTTGTG AGGCCATTTG GACTTCAGTG TGAAATGGTG TTAAAAGATG AAGTCATTTA TTCAAGAAGT AAACCTCTGC 000880
000881 CACCTGGACT GTGCTCAGAC ATTTCATTGA TTTTGTTTAA TAAACATTTT CTGGCTTTGG GAGGTGTCTC TCTTGGTAGA 000960
000961 GCACAGTGTC AAAGATGGAC AAGATGGACA CATAGTCCAT TATTTGGTAT TGTTTGTGTA TGGGAGCGGA CCACAAATTA 001040
001041 ATGTTTGGAG AACAATTTTG TCATAACACA CTGTTGAGGC TCAGTTGTAC AGAACTGGAA AAGTCTTTCA GCTTGGCACA 001120
001121 TGTCCTGATT CAGCCTTTGT TTAACATACA TTCCAATCCG GATTCTATCT TCACTGGCTA CAAAGACCAC CTGATACGTG 001200
001201 CACCACGACA CAGGAGCTGC TGGAGAGGGG GTAGTGTTAT CACCTCAAAC CCACAGCCAT ATttttcaaa agccagctta 001280
001281 gagagaggtg tactgatagc tgcatagaga acatgcagtc catccattct tcCCAGTGAT GTACATTTCT CAATCAGTAA 001360
001361 CCACGTGGTA TACCAGCCTT GAGTGTCACA TCTCCCAACC ATACCAAATG GATCACCTAA CTGGAGGTGG GGGGGGCCCC 001440
001441 TCAGAAATGA GATTTCGTAT TTACTGTAAA ATTGCCTTAt tttttctttt gaggtggagt ctcactctgt tgcctgggct 001520
001521 ggagtgcaat ggtgtgatca ctgctcactg caacctccgc ctcctgggtt caagcagttc tcctgcctca gcctcccaag 001600
001601 tagctgcaat tacaggcgca tgccaccact cccagcaaat ttttatattt ttagtggaga cagggtttca ccatgttggc 001680
001681 caggctggtc tcaaactcct gacctcaggt gatctgccca ccttggcctc ccaaagttct gggattaaag gtacgagcca 001760
001761 ccgcaactgg cTgagaatct ttttatttgc tgatttgtct cttgtgtatt ttctttgttc agatgtctc
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Predicted Small Protein

Name NONHSAT105457_smProtein_1019:1306
Length 96
Molecular weight 10711.2025
Aromaticity 0.0947368421053
Instability index 49.3694736842
Isoelectric point 8.98773193359
Runs 17
Runs residual 0.0498963945296
Runs probability 0.0373920633437
Amino acid sequence MGADHKLMFGEQFCHNTLLRLSCTELEKSFSLAHVLIQPLFNIHSNPDSIFTGYKDHLIR
APRHRSCWRGGSVITSNPQPYFSKASLERGVLIAA
Secondary structure LLLLLLEELLHHHHHHHHHHHLLHHHHHLLLHHHHHHHHHHHLLLLLLLLLLLLLHHHHL
LLLLLLLLLLLEEEELLLLLLLLLLHHHLLLEEEL
PRMN -
PiMo -