NONHSAT105457
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105457 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1829 nt |
Genomic location |
chr5-:177139134..177145570 |
Exon number |
7 |
Exons |
177139134..177140171,177140749..177140917,177141070..177141178,177143346..177143416,177144164..177144297,177145148..177145334,177145450..177145570 |
Genome context |
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Sequence |
000001 ATTTAGAGGT TTATTTCGAA CAACTGGCAA TTCCAGGAAT GATGGAATAA AGCATACGAA GTAGAAGGAC TGGAACCTCC 000080
000081 AGAAAAAGTA CTTTAAGTTA CCTACAGGTG ATCCTAGTCA GGTATGAATT GATAAGAAAT GCCTGCACCT TCCCTCCTTC 000160 000161 CTATCTTTCC CTTGcctaca gaaaattaaa aggcaaaaca atggacatct acatattctt cattcagatc aaccagtggc 000240 000241 tagcatttgc caccttttgc agtttctttc tctttccata agtactttct tctctgaatc atttgaaaGC AAATGAAAAC 000320 000321 AGTAGCCTAA AGTGTCAGTT TCAACCCGAA AATAACAGCT CTGATTTCTC ATGGCTCACA CTCGTCTGAA ATGACTCGGG 000400 000401 TAGAGGCTGA GGAAGGCTGT GTTGTTTGTC TACCTGGGAC TACACCTACT GAAAGAAGTT CTCAAGTTCT GATTGAGTTC 000480 000481 TAAAATTCTT TTGAAGATTG GAATTCTTCA TATGTAAAAA GAGAAGAGAA AGACATTCTT GATTTTGGTG ACTAGAGTTG 000560 000561 TAGATGCTGG AAGCTTTGCC ACTAACATTG ATGAACCAGA TGCATGTCAC CAGCCCATCA CGGGCACCAT GGGCCGGCAC 000640 000641 TGCCACGTTT TCCAAGGAAC CTGCCAGAGC TCCTGCGGAA GCTGCTCCTC GGGCGATGGA GTCCCTTTGC TGCTAGGCCC 000720 000721 TTCTTCAGTC ACCACAGGAT GCCTGCCATT CATGAACAGG AAGGAGAGGA CGGGCTTTGA ATAAAAAACA GGATCCAGGA 000800 000801 AATATTTGTG AGGCCATTTG GACTTCAGTG TGAAATGGTG TTAAAAGATG AAGTCATTTA TTCAAGAAGT AAACCTCTGC 000880 000881 CACCTGGACT GTGCTCAGAC ATTTCATTGA TTTTGTTTAA TAAACATTTT CTGGCTTTGG GAGGTGTCTC TCTTGGTAGA 000960 000961 GCACAGTGTC AAAGATGGAC AAGATGGACA CATAGTCCAT TATTTGGTAT TGTTTGTGTA TGGGAGCGGA CCACAAATTA 001040 001041 ATGTTTGGAG AACAATTTTG TCATAACACA CTGTTGAGGC TCAGTTGTAC AGAACTGGAA AAGTCTTTCA GCTTGGCACA 001120 001121 TGTCCTGATT CAGCCTTTGT TTAACATACA TTCCAATCCG GATTCTATCT TCACTGGCTA CAAAGACCAC CTGATACGTG 001200 001201 CACCACGACA CAGGAGCTGC TGGAGAGGGG GTAGTGTTAT CACCTCAAAC CCACAGCCAT ATttttcaaa agccagctta 001280 001281 gagagaggtg tactgatagc tgcatagaga acatgcagtc catccattct tcCCAGTGAT GTACATTTCT CAATCAGTAA 001360 001361 CCACGTGGTA TACCAGCCTT GAGTGTCACA TCTCCCAACC ATACCAAATG GATCACCTAA CTGGAGGTGG GGGGGGCCCC 001440 001441 TCAGAAATGA GATTTCGTAT TTACTGTAAA ATTGCCTTAt tttttctttt gaggtggagt ctcactctgt tgcctgggct 001520 001521 ggagtgcaat ggtgtgatca ctgctcactg caacctccgc ctcctgggtt caagcagttc tcctgcctca gcctcccaag 001600 001601 tagctgcaat tacaggcgca tgccaccact cccagcaaat ttttatattt ttagtggaga cagggtttca ccatgttggc 001680 001681 caggctggtc tcaaactcct gacctcaggt gatctgccca ccttggcctc ccaaagttct gggattaaag gtacgagcca 001760 001761 ccgcaactgg cTgagaatct ttttatttgc tgatttgtct cttgtgtatt ttctttgttc agatgtctc |
Predicted Small Protein
Name | NONHSAT105457_smProtein_1019:1306 |
Length | 96 |
Molecular weight | 10711.2025 |
Aromaticity | 0.0947368421053 |
Instability index | 49.3694736842 |
Isoelectric point | 8.98773193359 |
Runs | 17 |
Runs residual | 0.0498963945296 |
Runs probability | 0.0373920633437 |
Amino acid sequence | MGADHKLMFGEQFCHNTLLRLSCTELEKSFSLAHVLIQPLFNIHSNPDSIFTGYKDHLIR APRHRSCWRGGSVITSNPQPYFSKASLERGVLIAA |
Secondary structure | LLLLLLEELLHHHHHHHHHHHLLHHHHHLLLHHHHHHHHHHHLLLLLLLLLLLLLHHHHL LLLLLLLLLLLEEEELLLLLLLLLLHHHLLLEEEL |
PRMN | - |
PiMo | - |