NONHSAT105503
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105503 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1098 nt |
Genomic location |
chr5+:177475777..177481134 |
Exon number |
5 |
Exons |
177475777..177476322,177479534..177479688,177479804..177479990,177480841..177480974,177481059..177481134 |
Genome context |
|
Sequence |
000001 TTGCTTAATT TGTTTTTAAA TACTTTCCTg gctgggcgtg gtggcttatg cctgtaatcc cagcactttg ggaggccgag 000080
000081 gcgggtggat cacctgaggt caggagttca agaccagcct ggccaacaag gtgaaacccc gtctctacta aaaatacaaa 000160 000161 aattagctag gcgtggtggc gcactcttgt agtcccagct atttgggagg ctgaggcagg agaatcactt gaactcagga 000240 000241 ggcggaggtt gcggtgagcc gagatcatgc cactgcaccc cagcacctgg ctacagagtg agactttgtc tcaaaaaaaa 000320 000321 aaaaagaaca aaaaaaTTCT GACTTTAACC TCTGTTTTTC AGAGGGCACA AATTgttctt gtattgtttc cattttacat 000400 000401 ttttttcttg aagttatttt ccaattgttt tcattctttc tgaagttttg tttactcagt tttaagtttt tgtaaTTTTG 000480 000481 ATAGACTTTT GTGCTTTCAT TTTCTTAATG ACTTTTACCT CATTTTTAAA ACAAATCCAT AGTATGGATG ATATTGATGA 000560 000561 TGAAATGTCT TACGATGATC ATTTAGAGGT TTATTTTGAA CAACTGGCAA TTCCACGAAT GATGGAATAA AACATATGAA 000640 000641 GTAGAAGGAC TGGAACCTCC AGAAAAAGTA CTTTAAGTTA CCTACAGGTG ATCCTAGTCA GGTATGAATT GATAAGAAAT 000720 000721 GCCTGCACCT TCCCTCCTTC CTATCTTTCC CTTGcctaca gaaaattaaa aggcaaaaca atggacatct acatattctt 000800 000801 cattcagatc aaccagtggc tagcatttgc caccttttgc agtttctttc tctttccata agtactttct tctctgaatc 000880 000881 atttgaaaGC AAATGAAAAC AGTAGCCTAA AGTGTCAGTT TCAACCAGAA AATAACAGCT CTGATTTCTC ATGGCTCACA 000960 000961 CTCTTCTGAA ACGACTCGGG TAGAGGCTGA GGAAGGCCGT GTTGTTTGTC TACCTGGGAC TActcatgcc tgtaatccta 001040 001041 gcattttggg aggccaaaga gggagaattg cttgagccca ggagtttgag accagcct |
Predicted Small Protein
Name | NONHSAT105503_smProtein_266:442 |
Length | 59 |
Molecular weight | 6921.2212 |
Aromaticity | 0.172413793103 |
Instability index | 52.9156896552 |
Isoelectric point | 10.2310180664 |
Runs | 8 |
Runs residual | 0.0186623721106 |
Runs probability | 0.0663089560149 |
Amino acid sequence | MPLHPSTWLQSETLSQKKKKNKKILTLTSVFQRAQIVLVLFPFYIFFLKLFSNCFHSF |
Secondary structure | LLLLLLLLLLLHHHHHHHLLLLLEEEEHHHHHHHHHHHHHLHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo |