NONHSAT105589
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105589 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1760 nt |
Genomic location |
chr5+:178971224..178972983 |
Exon number |
1 |
Exons |
178971224..178972983 |
Genome context |
|
Sequence |
000001 cctcccaaag tgctgggatt acaggtgtga gccaccgcgc ccggccCATT TTACttttta ttatgaaaac tgagacattc 000080
000081 agagaagtaa acagaatata actcttttat actcattacc taaatttaaa agttttcaac aatttgccat ttttgcatca 000160 000161 tctattttat tttttggaag tattttaagg tgaggtctag acatcctgac atgctgctac ttaagagact aatgcagctc 000240 000241 ctaaaaagaa gggaattttc ctatgcaagc acaatccatt atcacatcta acagaattta cagtaattcc ataatatcac 000320 000321 ctagtatcta gcccatattc aaagttcccc aattaaaaaa tgtctttccc agcagaTTGC TCTGATCTCA TCAGGGTTGT 000400 000401 CTCTTGGGGT TTACAACAGG TGCTGTTTTC ACTTCCTCCT TTCTCCTCTA CGTTTTCTGC AAACTGGAAG CTAGATCTCA 000480 000481 AGctgtgctg gccagtacag tagtcaccag gcacatataa atttaaatta attgaactga agtaaaattc agctcctcag 000560 000561 tcatgcaaac cacatgtcaa gtgctcagta gctgcttgtg gccactggct atcttactgg acagtgcaaa tgaaaaacat 000640 000641 tcccatcacc tcagaaggtt ttgttggaca gtgctgCTCC AGATACCTGA TGTGTTTTTA AGCAAACTTT TTTTTTTTTT 000720 000721 TACCATTTTG CTTTTCATGA TCATACCTCA GACTTAAttt tttttttttt tttgagacag agtcttgctc tgttgctcag 000800 000801 gctggagtgc agtggcacga ccttggctca cttcaacctc cacttcccag actcaagcga tcctccagcc tcagcctccc 000880 000881 aagtagctgg gatcacaggt gccagccacc acgcctggct aatttttgtg ttttgtagag ataggttttc accatgttgc 000960 000961 ccaggctagt ctctactcct gaatcaaaga aatccgtccg ctacaacctc ccaaagtgct gacactatag gcgtgagcca 001040 001041 ccgtgcccag ccTAGGCAAA CATTTTTGGC AAGAAAACTT CATATAGCAT CGTTCAGAAA ATGATTTCAC Tggctgggcg 001120 001121 tggtggctga cacctgtaat cctagcactt tgggaggccg aggtggacag atcacttgag gtcaggagtt agagagtagc 001200 001201 ctggccaaca tggtaaaacc ctgtgtctac taaaaataaa aaaattccga gtgtggcggc aggtgcctgt agtctcagtt 001280 001281 tacgggctga gggtggagaa tcgcttgaac caggaggcgg aggttgcagt gagctgagat tgcactattg cactccaggc 001360 001361 tgggcgacag caagactccg tctcaaaaaa aaaGATGGTT TACAGCGAgg tgcggtggct cacgcccgcc tgtaatacta 001440 001441 gcactctggg aggttgaggc gggcagatcg cttgagtcca ggagttcagg accagcctga gcaacatgga aaaaaaccgt 001520 001521 ctctactaaa actacaaaaa ttagctggac atggtggtgc acacctgtaa tcccaggtac tcagaaggct aaggcagggg 001600 001601 aatcacttga gcctaagagg cacagtttgc agtgagccga gatcgcacca ctgcactcca gctcgggcaa cccagcaaga 001680 001681 ctctgtctca aaaTatatat atataactaa aaaatgctgg ccgggcgcag tggctcactc ctgtaatccc agcactttgg 001760 |
Predicted Small Protein
Name | NONHSAT105589_smProtein_359:502 |
Length | 48 |
Molecular weight | 5359.2024 |
Aromaticity | 0.148936170213 |
Instability index | 53.2765957447 |
Isoelectric point | 5.78961181641 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0323516794106 |
Amino acid sequence | MSFPADCSDLIRVVSWGLQQVLFSLPPFSSTFSANWKLDLKLCWPVQ |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLEELHHHLLLLL |
PRMN | - |
PiMo | - |