NONHSAT105614
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105614 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2296 nt |
Genomic location |
chr5+:179094877..179102346 |
Exon number |
2 |
Exons |
179094877..179096772,179101947..179102346 |
Genome context |
|
Sequence |
000001 ctgggaggcg gaggttgcag tgagctgaga tcacagcact gcacttcagc ctgggtgaca gagcgagact ctctcaaaaa 000080
000081 caaaacaaaa TTTCTTTTTC TTTGATTTTC tttttgtaga gatgggagtc tcattatatt gcccaggctg gtcttgaact 000160 000161 tcttgcttca agcgatcttc ctgccttaac ctcccaaagg gctgggatta caggcgtgag ccactgcacc tggccTAAAA 000240 000241 TATCTTTCTG TAATTCAATC TGTAGGTCAA ACCTGCCACT CTAATGTAGT GGTAGAAACT GAATTTCAGT TAATTTGGAG 000320 000321 GTTTTCCTGT CTTTCCCACA GGGGTATGGC ACTGTCAGCG GAAGACTGTC AGATCTCTGC AGCATGACCC TCATCCTTGT 000400 000401 TCCCAACCTT TTCTGTCAGT CACTGTCTGC CTCCCTTTCT TTGGTTGGCT GCCCATCAat gacctattat catcattgcc 000480 000481 atagatccct gagaagcact ccccctccca cagttgccat tccaatcttg ctacacagta taagagccct cttggcttct 000560 000561 gagggttaaa tgttgccatc cagaatggtt aaatgccatt ccagaatcgt gtcatcccca agacactaag gagccaagtt 000640 000641 ccatggcagc atctcctagc cacagagcac agccaccacc agctttctat gacaccagtg ccccctcacg tccacattct 000720 000721 gcattgcctt agtgaagagc gcctcctctg ggcagctcca tgaaacacct tctggtctca tgtaataaat ccgttctaac 000800 000801 attcccactt ccctgagcct tcatctctac ctcattaatg gtaggccact atggtgtcca agcttccggg agccgtctgg 000880 000881 cgtgaagaca agctccagct gtcctttgac aggactttaa atcctgagtc ttggggcatg cacccttgtc aatcaatgcc 000960 000961 ccaccggtct tctattgccc cctccccgcc tggatctggt accccacctg gatctggtac cctcatgatc gctcccgcaa 001040 001041 gtgttctccc aggtcctgca actttttggg tgactgagtg atttcctcct agggtaggaa atatttcact gcttgggcta 001120 001121 tgctgagatg tgatcctgct tgttggtctg gaggcaatga gaggaggtgg atcttgagga ggattagtgt tatcttacag 001200 001201 ggtactcacc tgtaacgggg agatctctgc actgtctcca ggctagatga agctgtcctc ctctgtcaat gggaagaagg 001280 001281 cagtttctgc tggccaggat gcttcagggg actctggggg ctcaaggttc tttggtacat ccacccaaac atcccacgtc 001360 001361 aggcctagag tcccatttat tcctttaaaa gcacccaatg ggccggttac tgtggctcat gtctgtaatc ccagaagttt 001440 001441 gtgaggccat ggcaggtgga tcagttgagg ccaggagttc gaaaccagcc tgaggaacat agcaagatcc ccgtctctac 001520 001521 aaaaataaaa atAAtagaag cccccacttt agtacaggag acctgctgag gatgcacaag tgtcttttgc agctctgctg 001600 001601 ctcttgtgat gaaatattgg ttctcatttt cagcatgctc tgcctcctgg ccacggaagc aaggttttct ttacatgttg 001680 001681 tcttgggaga gttcctgcct ttcacagcat actctgagta gatagcaggc tgaactgcat ctttcattct cttgcttcaa 001760 001761 agctgctaag gtgatttaga aaagctagcc acctccataa tccttGCAAC AGCAGCTGCT TCCACATCTT TCAAGTGACA 001840 001841 AAGCTACTGC ATAAGCCAAG CTTTCTCTTC AACTTCTATC TCCTTATCTA CCACAGacgg agtctcgctc tgttgcccaa 001920 001921 tctgcaatgc gtggcacaat ctcagctcac tgcaacgtct gcttcccagg ttcaagaaat tctcccacct cagcctcccg 002000 002001 agtaactggg attacaggct tgtgccacaa cacctggcta atttttgtat ttttagtaga gacggggttt caccatgttg 002080 002081 gccaggcagg tctcgaactc ctgacctcag atgatccgcc tgccttggcc tcccaaagtg ctgggattac aggtgtgagc 002160 002161 caccacacct ggccCTCATC TCTCCTCTTG CTTGACAAAC CTACACAGCC TTTTTGACCT GCCTCCTCAA ACCCAGAAAT 002240 002241 ATttttgcaa agctctattc cccagaggat tctgagctgt aggaggtgaa agccag |
Predicted Small Protein
Name | NONHSAT105614_smProtein_383:568 |
Length | 62 |
Molecular weight | 6615.79 |
Aromaticity | 0.0491803278689 |
Instability index | 65.2081967213 |
Isoelectric point | 8.65997314453 |
Runs | 12 |
Runs residual | 0.0439042773695 |
Runs probability | 0.0283298003887 |
Amino acid sequence | MTLILVPNLFCQSLSASLSLVGCPSMTYYHHCHRSLRSTPPPTVAIPILLHSIRALLASE G |
Secondary structure | LEEEELLLHHHHHHHHLLLEELLLLLEEEELLLLLLLLLLLLLEEEHHHHHHHHHHHHLL L |
PRMN | - |
PiMo | - |