NONHSAT105652

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT105652

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1931 nt

Genomic location

chr5-:179295058..179297408

Exon number

2

Exons

179295058..179296834,179297255..179297408

Genome context

Sequence
000001 CGGATTGATG CCAGCCAGTT CCGGGAACTC TTTGCCAGCC TGACACCCTG GGCCTGTGGC TCCCACACAC CTCTGCTGGC 000080
000081 AGGGCGCATG TTCAGGCTCC TGGACGAAAA CAAGGACTCG CTGATCAACT TCAAGGAGTT CGTGACAGGG ATGAGCGGGA 000160
000161 TGTACCACGG GGACCTGACA GAGAAGCTCA AGGTGCTCTA CAAGCTACAC CTTCCCCCAG GTGAGAGCCT CCTGCCCACT 000240
000241 CCCCAGCCAG GGTCTCCCAC TTGTCCAGAA GTTCAGCTGC AGAGGACAGG CCTCTGTGAG ACTGTGGGGC CTCGAGGGGG 000320
000321 CACAGCAGCG TCGCAGGCTG GAGGTTCACA TTGGAGGAGA GGGAGCGGGA GCTTGAGCAC TTCACAGAGG TCTGAGAGCA 000400
000401 GGGCCTTGGC CTGGGAAGGG ACGTGGAGGA GAATCCCATG GGTGACCGGG CACTGCTGGG TACAGAACTC CCACCGAGGA 000480
000481 GGCAGCTGGA CCCAAAACCC ACTAGGAGGG CCATGAGTGG AGCTTCAGGG CTGGAACCGA AACTGCTGCA TTTATCTGTC 000560
000561 AAGTTTCTTA AGGGTTTATT CCCAGAGTTT CAGCTAGAGA ATCCTGTCAC ATGGCCATGA GGAGGGGCCA CTTCTCTCTG 000640
000641 GCCTCTCAGT GGTGCTGTAG CCTAGTGGGG CTGCACTGGC GACAGGCTGT CTGTGCAGGG GGCAGGGCTC AGCAGGAGTG 000720
000721 GCTGCATGGA CAATGCTCCA AGGAGGGGTC ATCTCCCTCA TCACAGAAGG AAACAAAGGC GCAGGCAGGT GGAAATCCTG 000800
000801 GGCTGGGCAC TCTGCTGTGG CTGGACCTGC CCCAGGTCCC TGCTGTCGCT TTGCCATCTG AGGTTAGCAg ctgccctcag 000880
000881 aaccgacccc ggggatgttt agaatactgg ggctgagctt cacccgagga gattctcact tgattgcctg tgatggggcc 000960
000961 cagacctgtg gtttttaaag ctggcaggcc attgctctgt gcctccagag ctgaaggctc ttgACATAGC TGTTCTCGTT 001040
001041 TGTGGCTGGC TCACCAGAGA GGCCGTGGTA GGACAGACCC CACTGGGCCT GGTCCCAGGG TTGAGAGCAT GCGGGGCTAC 001120
001121 CCTGAGACTC CTGAGCCTCC TCAGCCTGCC CTGCCCTGTC CTGTCCAGAC ACAGAGAACA CTTGGGCTCT GCTGGGCTTG 001200
001201 TGGCCCATGC CCGCTACACT CACCCAGGAC CATGCGATCC GCAACCCTGG GTACTGCTTG GTGACCTCCA GCAAAGACTG 001280
001281 CACTGAATGA GGCCGGCCAG CACGCACAAC GCGGCCCGAC CTCTGAGCTA CCCAAAGGGA GAGCAGCAAG TTGCCTGTGC 001360
001361 GTGGCTGGTT CCTGTGCGCC CATAGGAGCA TGAAACGCCC CCAAAGGGCC CACTGGCCAG ATGGTCACTG GGGCAGGCGG 001440
001441 GCAGCTGCCA TTCACTGGAC TCCTAATTGT GTTGATTGGA TTTTTACCTG GGACATGTAT TTCCTTTTCA AACACAATGT 001520
001521 CAAAGTCAGG AAAGCGGCTG GATGCAGtag gaggcccagg cgggtggatc acttcaagtc aggagttgga gaccagcctg 001600
001601 gccaacacga tgaaacctgt ctctactaaa aatacaaaaa ttagctgggc gtggtggtgt gtgcttgtag tcccagctac 001680
001681 ttgggaggct gaggcgggag aatcacctga acccggtagg tggaggttgc agtgagccga gatcgtgcca ttgaactcca 001760
001761 gcctgggcaa caagagcaaa actccAGgct gggtgcggtg gctcacgcct gtaatcccag cactttggga ggctgaggtg 001840
001841 ggagaatcac tgtagcccag taggcggagc ttgcagtgag ctgagatcat gtgactgcac tgcagcatgg gtgataaagt 001920
001921 gagagtccat t
[back to top]

Predicted Small Protein

Name NONHSAT105652_smProtein_437:619
Length 61
Molecular weight 6738.8384
Aromaticity 0.0666666666667
Instability index 45.8916666667
Isoelectric point 9.97991943359
Runs 10
Runs residual 0.0169326241135
Runs probability 0.034905493729
Amino acid sequence MGDRALLGTELPPRRQLDPKPTRRAMSGASGLEPKLLHLSVKFLKGLFPEFQLENPVTWP
Secondary structure LLLLEELLLLLLLLLLLLLLLLHHHLLLLLLLLLHHHEELHHHHHLLLLLLLLLLLLLLL
PRMN -
PiMo -