NONHSAT105652
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105652 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1931 nt |
Genomic location |
chr5-:179295058..179297408 |
Exon number |
2 |
Exons |
179295058..179296834,179297255..179297408 |
Genome context |
|
Sequence |
000001 CGGATTGATG CCAGCCAGTT CCGGGAACTC TTTGCCAGCC TGACACCCTG GGCCTGTGGC TCCCACACAC CTCTGCTGGC 000080
000081 AGGGCGCATG TTCAGGCTCC TGGACGAAAA CAAGGACTCG CTGATCAACT TCAAGGAGTT CGTGACAGGG ATGAGCGGGA 000160 000161 TGTACCACGG GGACCTGACA GAGAAGCTCA AGGTGCTCTA CAAGCTACAC CTTCCCCCAG GTGAGAGCCT CCTGCCCACT 000240 000241 CCCCAGCCAG GGTCTCCCAC TTGTCCAGAA GTTCAGCTGC AGAGGACAGG CCTCTGTGAG ACTGTGGGGC CTCGAGGGGG 000320 000321 CACAGCAGCG TCGCAGGCTG GAGGTTCACA TTGGAGGAGA GGGAGCGGGA GCTTGAGCAC TTCACAGAGG TCTGAGAGCA 000400 000401 GGGCCTTGGC CTGGGAAGGG ACGTGGAGGA GAATCCCATG GGTGACCGGG CACTGCTGGG TACAGAACTC CCACCGAGGA 000480 000481 GGCAGCTGGA CCCAAAACCC ACTAGGAGGG CCATGAGTGG AGCTTCAGGG CTGGAACCGA AACTGCTGCA TTTATCTGTC 000560 000561 AAGTTTCTTA AGGGTTTATT CCCAGAGTTT CAGCTAGAGA ATCCTGTCAC ATGGCCATGA GGAGGGGCCA CTTCTCTCTG 000640 000641 GCCTCTCAGT GGTGCTGTAG CCTAGTGGGG CTGCACTGGC GACAGGCTGT CTGTGCAGGG GGCAGGGCTC AGCAGGAGTG 000720 000721 GCTGCATGGA CAATGCTCCA AGGAGGGGTC ATCTCCCTCA TCACAGAAGG AAACAAAGGC GCAGGCAGGT GGAAATCCTG 000800 000801 GGCTGGGCAC TCTGCTGTGG CTGGACCTGC CCCAGGTCCC TGCTGTCGCT TTGCCATCTG AGGTTAGCAg ctgccctcag 000880 000881 aaccgacccc ggggatgttt agaatactgg ggctgagctt cacccgagga gattctcact tgattgcctg tgatggggcc 000960 000961 cagacctgtg gtttttaaag ctggcaggcc attgctctgt gcctccagag ctgaaggctc ttgACATAGC TGTTCTCGTT 001040 001041 TGTGGCTGGC TCACCAGAGA GGCCGTGGTA GGACAGACCC CACTGGGCCT GGTCCCAGGG TTGAGAGCAT GCGGGGCTAC 001120 001121 CCTGAGACTC CTGAGCCTCC TCAGCCTGCC CTGCCCTGTC CTGTCCAGAC ACAGAGAACA CTTGGGCTCT GCTGGGCTTG 001200 001201 TGGCCCATGC CCGCTACACT CACCCAGGAC CATGCGATCC GCAACCCTGG GTACTGCTTG GTGACCTCCA GCAAAGACTG 001280 001281 CACTGAATGA GGCCGGCCAG CACGCACAAC GCGGCCCGAC CTCTGAGCTA CCCAAAGGGA GAGCAGCAAG TTGCCTGTGC 001360 001361 GTGGCTGGTT CCTGTGCGCC CATAGGAGCA TGAAACGCCC CCAAAGGGCC CACTGGCCAG ATGGTCACTG GGGCAGGCGG 001440 001441 GCAGCTGCCA TTCACTGGAC TCCTAATTGT GTTGATTGGA TTTTTACCTG GGACATGTAT TTCCTTTTCA AACACAATGT 001520 001521 CAAAGTCAGG AAAGCGGCTG GATGCAGtag gaggcccagg cgggtggatc acttcaagtc aggagttgga gaccagcctg 001600 001601 gccaacacga tgaaacctgt ctctactaaa aatacaaaaa ttagctgggc gtggtggtgt gtgcttgtag tcccagctac 001680 001681 ttgggaggct gaggcgggag aatcacctga acccggtagg tggaggttgc agtgagccga gatcgtgcca ttgaactcca 001760 001761 gcctgggcaa caagagcaaa actccAGgct gggtgcggtg gctcacgcct gtaatcccag cactttggga ggctgaggtg 001840 001841 ggagaatcac tgtagcccag taggcggagc ttgcagtgag ctgagatcat gtgactgcac tgcagcatgg gtgataaagt 001920 001921 gagagtccat t |
Predicted Small Protein
Name | NONHSAT105652_smProtein_437:619 |
Length | 61 |
Molecular weight | 6738.8384 |
Aromaticity | 0.0666666666667 |
Instability index | 45.8916666667 |
Isoelectric point | 9.97991943359 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.034905493729 |
Amino acid sequence | MGDRALLGTELPPRRQLDPKPTRRAMSGASGLEPKLLHLSVKFLKGLFPEFQLENPVTWP |
Secondary structure | LLLLEELLLLLLLLLLLLLLLLHHHLLLLLLLLLHHHEELHHHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |