NONHSAT105843
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT105843 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1497 nt |
Genomic location |
chr5+:180256969..180258971 |
Exon number |
2 |
Exons |
180256969..180258229,180258736..180258971 |
Genome context |
|
Sequence |
000001 CCCACTTTAC TTCAAGTGAA GTCACTGGGT TGTCCCCATG AAATATCTCC ACAATGGGTG TGCTAGACCT TTACTCTCTG 000080
000081 TGGCACCACC AAGACCCCCT CACCCTGCCA GAGCCCTCTG AAGTGTACTC AGAATGGAGG GGCTGGAAGT GGGGCCAGTG 000160 000161 GTCCTGGTAG TCAGCCTCCC CTTCTGACAC AAGAATTATC GTGGAACAGC TTGTGTGACC GATCAACTGG TCTCTCCATC 000240 000241 TTTAAGCCAT TGTCTTGTTG ACTCTGTTAC TGCAGAGTTT GGGGAGGTCT CATGGCTTCT CGCATCCTAT TTCCTGAGCT 000320 000321 TCCCTGAAGC CAACTTCTGG CCACTGGTAT GTGATGCGAG CACAGTGCCT CCTCCTGCTC CTCCAGGAAG Cttctgctga 000400 000401 ttgaacgcag gccagatggc gagatccgga gcaaccttct tagatcaagg gaagaaaggg gcacaagagg ggagtaggta 000480 000481 acaagataaa aggagctccc tccctgatga ctacagagcc atcgtggcag ccctgggcCT CCATTTCAGA CGTTCATCTT 000560 000561 GCCTAAGCCA CCACCATCAG GGTCTCAGTC AGTCATCATT CTCATTTACT CGGGTGGCTG GGTGAGGGCG GAATACTACC 000640 000641 TTCCAGCTGT CTGAGATTAA GCCTAAGCCA CCACCATCAG GGTCTCAGTC AGTCATCATT CTCATTTACT CGGGTGGCTG 000720 000721 GGCGAGGGCG GAATACTACC TTCCAGCTGT CTGAGATTaa gcagaacagc agctaaagca gtaacagcag gtctccttca 000800 000801 gcagcttgcc acagggaaga gggtcccgcg tgaaccgaac tcaacttcca cctgcgcaga ggtagctACC ATTTGCGTAG 000880 000881 AGGTAGCTGG GTCTTTAAGG TTAGAGGGAA GGCGCAGGGA GGGAGAGACG GCGGGTGGGG GTTGAACAAA GTGGAGATTC 000960 000961 ACAAAAGCAG ACTAGGGCGG GCGACGTGAT CAGATGACCT GTGCGGGCGG CAGCCTCCTG CCCTCCTCCC CTTCGTGCGC 001040 001041 Cggctggagc gaagagttct tttgacagcc gtgagcttcc ccgccaggaa cttactgggg ctgcatcacc ctagaaacgt 001120 001121 ggctttgggc tgtggaaacg ctgcctctgt ggaagtctct cctcgcgggg gtggacgggt cgctgcgcgc ccagcgttct 001200 001201 tctgcggttc tcaCAGCCCG CCGCCGCCGC CGCCTCGGGG ACCTTTGCGG GGAGGCCTCA GGGCACCTTC CTCCTCTCTC 001280 001281 TCAGGCACGT CCTCGACCTC AGTTGCCACG TGCACATGCT GGTGCCTTCC AGGTCGGTCT TTCTCCACCA GACTCCACCT 001360 001361 GGAACTTTCT TCCTTTTCGT CCTGTGCTGG CCTAACCCCT GCTCGGCCTC GGCCCTCAGC TGCCGGCTCT AACAAAGCCT 001440 001441 CTGTCTTTCC CAGACCCCTG TGACCAGGTC AGGCTCTGct ccctgcgttc ctctctc |
Predicted Small Protein
Name | NONHSAT105843_smProtein_53:169 |
Length | 39 |
Molecular weight | 4701.1915 |
Aromaticity | 0.210526315789 |
Instability index | 49.5289473684 |
Isoelectric point | 4.86297607422 |
Runs | 8 |
Runs residual | 0.0379155124654 |
Runs probability | 0.0345345345346 |
Amino acid sequence | MGVLDLYSLWHHQDPLTLPEPSEVYSEWRGWKWGQWSW |
Secondary structure | LLEEEHHHHHHLLLLLLLLLLLLHHHHHLLEELLLLLL |
PRMN | - |
PiMo | - |