NONHSAT105969
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105969 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2812 nt |
Genomic location |
chr6-:142272..145083 |
Exon number |
1 |
Exons |
142272..145083 |
Genome context |
|
Sequence |
000001 CCTGCCTGTG GTAGTTATGG AGACCCCCAG GTGTTGAGGC AGGGCTGGGG TGTCCCCTTC CAACCAGGCT GTCAAGGCCC 000080
000081 CAACTCTGGG GCAGAGGCAG TGGCAGGGCA GCCAGGTTTG TGCCAGAGCC TGAGCAGGTT GAGGTGGGGT CAGGCAGGGC 000160 000161 TGGGAGTCAG GGCAGGGGCA GCAGCAGTGG ACCCGCTATG CACACATCTT CTTCTCCAAG GTTTGTGTGC AGAACATCCT 000240 000241 GCCCATGCTG ACCCAGCAGC TTCAGTTGGC ACCTGCCCCA GTCCAGCCTC TGGGAACCAT GCAGCAGCTC CCAGCGGCCC 000320 000321 TGCACCCACC ACCAGCATCC GTTTCACCTG CAGTTGAAGA TCCGTGAGGT GCCCAGAAGA TCATGCAGTC ATCAGTCCCA 000400 000401 CGGAGCAGCC CGCGAGGCTG AGGCTCCTCC CACTGGACCG CCCCCCAACT GGCACCACTG CTGCCCCTGC CCCTACTCTC 000480 000481 AGCCTCACGT GACTCTCGGG CAGAGGCAGT GGTGGGGCAG CCAGGGCAGC GTCAAGAGTC TGAGCCAGGT GAGGTGCGGT 000560 000561 CAGGACCCCC ACAGGGCTGG GAGTCAGGGC AGGGGCAGAA CAAACCTTGG AGGGGAAGAT GTGTGCATAG TGGGCCTGGA 000640 000641 GGGCGGCTGT GGCCTAGTGG ACAGGAAGAA GCAGTGGGCC TGGAAGAGCT GCATGATCAG GGCCGGCACT GGTCCAGGGC 000720 000721 ACGTGCAGTG AAGAGGACAG CTCCTTCTCG GTCTCCGGTT CCCTGAGCCT GTCCTCGGCT TCTCCACCTG TACAGGCAAA 000800 000801 GGGGAAGCTG TCCCCATCAC ACATGGCACA CTTGGGGGTG TTGGGCTTTG GACTGCAGCT GGAACATCTT CTCATCTTGC 000880 000881 ATTTGGGCGT GGTGGGGTCC TCCAGTGTGG GATCCATGTC CGTGGGGTTC CCTCTGCCCC GACCCCTAAA GCCCAGTCAG 000960 000961 TTTCTCTTCA GGCTCTGCTC CCCGGGTGGC TCAGCCCAGC TCCTGCCTAG GAAAGCCTTA GTGTTGGGAG GGACCCTGAT 001040 001041 GACTGAGGAG CCTGGTAGCT CCAGGTCGCC CACACTTTCA GGTCTCTTGC ACCAGAAGGT GGCAGGATCC ATTGGGAGGA 001120 001121 AACAGGCCAC CTTGGAAGGC GTCCCTGGGC CCCCATCCCC AGGGGTTGGG GCCGTAGGGG GCCCGCTCTG CTGCGTTGAC 001200 001201 CAGACTCCTG GGCTTTGAAG GCTCCTGGGC CCAGTAAGAA GGAGGTGGGC GCCAAGGTTG AGGAGGAAGC ATCCGAGTAT 001280 001281 GTGTAGGAGG AGGACAGGGT GTGACCATAG ACTGCCAAAA GCTGCAGGTG GATCGGGGGA CGCTGGGGGC TCAGGATCCA 001360 001361 GCAAGGGGCG GCAGGAGTAA AGGAGGAAGG AATGACAGGT GCAAATACCT TCCCACCAAA GCCCTTGTTG CCCTCTGGCT 001440 001441 CCTCCCCAGA GCTGTCCCCA CTCTCAGTCG GTCACCCACT CCTTGAACTT GAGATCGGTG TCGGTGGTGC TAAAGCCATC 001520 001521 ATCAGCAATG ACATCATCAC CCCCTCCTCC TCATGGATGA CCGTGTGCTC CTCGTCACTC GCTGTGTCCT CACTGGCCAT 001600 001601 GTGCTGGGAA TGAGCAGCTC AGGTGGGCAG CAGCAGGGCT GCCCACGGGT CACCTCCCTC ACCAGGGGCT GCAAAGTGGC 001680 001681 CTGGAGCTCC ATGCTGAGTA GAAGGCTTTG GGCCAGAGTA TGATGCAGTG CCAGACACCA CCTGTGTCAG TTCCCGTAGT 001760 001761 GCCTGACGGT CTATTTCCCT GCCGTCCAGG CTGTGTACCC CGCTGTGGGA GAAGGCTTGG GCCAGGCTGA GCCAGGTTCC 001840 001841 CTGACTGTGT GCAGCCGTTC TGCCCCACAG AAGCTGCTCC TTGGCATCCG AGCTCTGGAG TGTTTGGGCT GCAACTGACA 001920 001921 GGAGTTCAGA GGACGCCCCA GGGGCAGTGG CAGTGCCCGT CTCTGATATG CTCCGCTCCC ACGAGCCCTT GTTACACTGC 002000 002001 TGCTAGCCCC TGGCTTGTGG GCTTGGCCTC TGAGCTGGAC TTCTTTCGGT CCTTGTTGCA AGTGGGCCAC CTTCACCTGG 002080 002081 AAGGCCAGGT CGTATTTCTG CATCTCACTG GGCCCCAGGG TGTACCACCG CTCGCTCAGC ATCTGGCTGA CGGTCCGGTT 002160 002161 ATCCTGGTTG GGGTGACCCT GGTGCGCCCC GCCAGGGCCT GGTGCCGCTT GCTGAAGATC ATGAGCGCCA CTCATGGGCC 002240 002241 ACCAGATGTG GTCCTTGTCC CATTTGTTGG GGCTGCGTCC ATCCTTCTCA GAAGATGAGT CCTGTTCCTT GCGCAGGGCA 002320 002321 CTGAGGGACT GGGCCTGACA TCATCTGAGT GGTAGAGGCA ACTGGGTGTC AGGAGACATG ATGGAGAGGA AAGCATCATC 002400 002401 ATGGTCATTC TCTGTCTCAC TGTCCAGCAG GGACTCCCCT GAGGGGCCCA GGGCTCCTCC TCCATGGTGG GAGGTGAGCT 002480 002481 TTTACCAGGT TCCACCACCC CCAAAGTGTG TGGGGTTGCG GGCCCTGGGC TTTCAGGGCA GGTGGCTCCA GGGGGCCGCC 002560 002561 CAGGGTCAAC ACTCCCTGTC CCACCTGGTG GACGCTCATG AGCAACAGCT GGCAACTTGG CAGGTTGTTT TCTCTGGTTG 002640 002641 CAGGCCACTG AGTGACTGGC AGGTTGCTGG GCCTCGTGTG GCTGCAGGGA GGGGTCAGGA AGGGGATGGA GTACCAGGGG 002720 002721 AACACAGCCG CAGAGTGACC TTCCACATTC CTCCACACGA ACATGCTGAC GCCACGGGAG GCCTCACTGA ACGCAGGCCT 002800 002801 GGGGGCCGAG TA |
Predicted Small Protein
Name | NONHSAT105969_smProtein_1391:1612 |
Length | 74 |
Molecular weight | 7469.5623 |
Aromaticity | 0.041095890411 |
Instability index | 56.6164383562 |
Isoelectric point | 4.73077392578 |
Runs | 12 |
Runs residual | 0.0202386212992 |
Runs probability | 0.0427265500796 |
Amino acid sequence | MTGANTFPPKPLLPSGSSPELSPLSVGHPLLELEIGVGGAKAIISNDIITPSSSWMTVCS SSLAVSSLAMCWE |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLEEEEELLEELLLLLEEEEEE HHHHHHLHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTT TTTTToooooooo |