NONHSAT106021
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106021 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2780 nt |
Genomic location |
chr6-:350248..354323 |
Exon number |
2 |
Exons |
350248..352633,353930..354323 |
Genome context |
|
Sequence |
000001 ACCAAGGTCC CAGAGAGCAG GCGGGGCACT GGGCCCTCAC TCCCCAATAT GCAATCAGTC ACCAAGAATA GTTGCATGTC 000080
000081 CTTCCCCACC CTCCATCAAG TCCATTTGCC TGCTGGGCCC CTCTTCATCT CCACCACCAT GACCCGTGGC AGGCTGCTGT 000160 000161 TTTTTCTCAC CGGCATAGTC CTAGCAGCAG CCTCCTGACT GGCCCCAACA TGCAGTCCCA CCCCACTTGG GCACCTGCGT 000240 000241 GAGCCTTCTG CCTGCACATC CATCATGCGT CCCGCTGGCT CAGCACCCTT CAGCAAGTCC TCCACTCCCC CACCATCTGC 000320 000321 AGAATTGCAG CCGCACCACT TACAAGGTTA CAAGCTCAGG AGTCAGACCT CTGAGAACAT GGTAAGGTGC TGCCTGGGCC 000400 000401 GGAGCCCATG AGTGACTCTG CTGAGCTCCT CCCAGCTGCT TTCGCCAGCC ACAGCTGGCA GCCCCTTGTG CCCTCACTCC 000480 000481 TTCCCTCCCT GCCCACTGAT TTGGGACCAA AAGATCCAGC AGGTTCCAGT CCCAGCAATG TGGACATCTT CAGGCGCATT 000560 000561 CCGAGGTGCA TTTCACAGCC CCTCTGAGCC TCGAATGAGT GAAATACCTT CTCTGTCAGT TTAAAAAGCT TAGGGGCAAC 000640 000641 AGTTCGGGAC CTGCAGAGCA GCACGCAATT ATGAGATGAT GGGTGTTGGT GTCAGATATA AGCCTGCAGT AAGACATGGT 000720 000721 AGTGGGGAGT GACATTGGCT GAGAGCTGGG TGACCCTGCA GACTGGGGCT GTTGCATGAA AACCTGTTTT CCTGCTGTGG 000800 000801 CTACTGCCTC ACACCCCAGG AGACACACAC AAGTCTTCCT GGGCTGTGCT GGGGCCTGGC TGCTGCCTCC TGAGTGGGCC 000880 000881 CCACAGGAGA CACAACCAGG GCTTGCTGGT CTGGCCCATG AAAACACTCA GAGGCACCGA GGACAGAGCC ACCTGTGCCA 000960 000961 TACCAGGCAT TCAGAGTGTC CCCTCACGCT CATCGGACTG CTGCAGAGGC TAGAAGCTCA GGAGTCAGAC CTCTGGGGAC 001040 001041 CTGGCAAGGT GCCTTACCTC CCTATGCCTC TCCTGTGGCC CCCAGCCACT CCCCTGAGCT GCTGCCGGGA GCTTCAAGGC 001120 001121 ATCAGAATCT ACATAAAGTC TGCCACCTAC AGTCAACCAG CTCATGAGTT CACTTGCCTT TAGATCAACC CAAACTTACC 001200 001201 CTAGCAGCGT TAAATTTCCC TTTTCCTCCA CCAGATCAGA GAAGGAAAAT TTTACAAATT GACTTAAATT TCTCGTCAAT 001280 001281 TCAGGTGACG TTCCCTCAGA TTAAAAGCTG AAGATGGAAT GAGAGTAGCT GTGTTCAATG CTGTGCGGCA GATGCACACG 001360 001361 GCGCGGCTGG CTGCATGCTC CTGGGCAAAC ACAACTCGTT CCAGGTGCCG AATACGCCGC TCCCACCGTG CAGGCAAAAC 001440 001441 AGAACTAACT CTCATGTCCA CATTTCCTTC GCCTCACACT CATGGCCTAT TTTTCTTTCT TGGAGACATG AATTCACCTT 001520 001521 TTGTAGCATC TGCTATAGCG CCTTCTGGAG GCAAACAATA GCCTCTAAAA TAAAACCAGG AGTAGGCTTC AGTCTTGCCT 001600 001601 TGGAATCCCT CACAGGCAGA AGGGCGCGTG GTGACTGCCC CTTGGCTAGG GAAGAATGCA TCGCACGCGA CCTTAAACTT 001680 001681 GGCTAAGTTG CCCTTTATTA ACGAAAACAT AGAGCTTTCG GTCAATTCCA CCACGGAGAA CACAAACCAG AGATAAAACC 001760 001761 CACACCAAGG GCTATTTCCC AAGCTGGGGA ATTTGAGAAC ACACGGGCAG AGTTCACGCC ACACAACTAC ACTGGGCTCG 001840 001841 TCCTTGGGAG GCGTTCACAG GAAGCAATCA CGAGCGCCAA GCCACCCACA AGGCAGTGCG GCAAGGCTCC CGGGATCCTT 001920 001921 ACAGGCATCC AAGCGAGGTA CAGAAACCTC CACAGCAGTG GGGATAAGGG GAAAATATTT TCTCTTGCTA AAGAATATCC 002000 002001 TTAGTTCTCA ACATAAACAT GACTACGTAT ATATTCAGCT TCAAATGAAA AACAAGTTTA CAAATCACTA CTGGATACTT 002080 002081 AAACTCTATG TTGCTTTTCT TTTTGGCAGC ACCAGCCTAA ACTCTGTGGG TTTGCAATAT TTCAGAAACT TCAGGTACAT 002160 002161 TACAGTCTTC TGAGAAAGGC CCAGAACTTC AGAATTCCCG GAGCGGCTGT GAAGAAAGAA CATTACTGGC AACAAATATT 002240 002241 AAAACAACAT TTCAAGAACT CCAAGAATAC ACTGAGAGGT TTGTAAAGGT GCACATATTT AAGCATTCAA GCTATATCCT 002320 002321 AAATCATTTT TCTGTTAACG TATTTATTTT TGGCTTAGGA AAAACATGTA CTTTATTGGC AAATTGTTTT AGCTGTAGAC 002400 002401 GGATGGATGA TTCTACAGCC ACACTCCCCT TTCCGGGTGT ACATCCGGGG CCTGTGCACC TGCGCGGAAT CAGGCAACTT 002480 002481 TGTTTTTCCC GGTCCCCAAA AAGCTCACCT TTGACACACC CTCTATATGC ACAGGAAAAC TGCTCTTCTT ATTCAGGGTC 002560 002561 TCTTTTTGTG GTGGAATTCA GAGAAACTGG GTTGCAACAT CTTTTTAGGG AGAGGTCGAG TATGTTTTTT CATTCGAGTG 002640 002641 ACTCTGCATG CTTAAGGAAT CTGAGTCGGT ATAAAGGACT AGACCACTGA ATTGCGTACA GCGTCCCAGG ATGCCTGCAG 002720 002721 CCCCAGAGTA CAAACTGTAG ATGCTCTCGT GGCCTGAATG TGGAATTTTA CCCACCAGAA |
Predicted Small Protein
Name | NONHSAT106021_smProtein_2402:2689 |
Length | 96 |
Molecular weight | 10727.9748 |
Aromaticity | 0.105263157895 |
Instability index | 69.4315789474 |
Isoelectric point | 8.59503173828 |
Runs | 11 |
Runs residual | 0.0132615002072 |
Runs probability | 0.0466107819049 |
Amino acid sequence | MDDSTATLPFPGVHPGPVHLRGIRQLCFSRSPKSSPLTHPLYAQENCSSYSGSLFVVEFR ETGLQHLFRERSSMFFHSSDSACLRNLSRYKGLDH |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEEEEEL LLLHHHHHHLLLLEEEELLLHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |