NONHSAT106136
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106136 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1880 nt |
Genomic location |
chr6+:800157..804319 |
Exon number |
4 |
Exons |
800157..800335,800700..800794,801803..801919,802831..804319 |
Genome context |
|
Sequence |
000001 AGAACAGGGC CACAGGAGGC TGCTTCCTTT AATAATAAGG CCAGCAGGAT GGCATGTTAA ACATATCCTG TTACTTTAGG 000080
000081 GTTCCAAGCA TATCTGCGTT AGGCACTTGC TGCCTGGGAT TCCAGGATAC ATTTGTCAGG AAAAAGTAAT CAAAATTCAC 000160 000161 TCTTTGAGCA GTGAAAAGCG TAGCTGGGAT TACAGGAGCT CACCACTAAG CCTGGCTAAT TTTTGTATTT TTAGTAGAGA 000240 000241 TGGGGTTTCA CCATGTTGGC CAGGCTGGTC TCGAGAGCTC TCCTGGGTCA CACTGGGTGT AACCTGAATT CAAATTCTCA 000320 000321 CCACCTTCCC CACCAGGAAA CAGGAAGCCC TGAGAAAGAG AAATATATTC TCTTTCTAAA ATTGTGATTC AGACACAGAA 000400 000401 GGCAATCACG TGTCCATACA TCCATGAAGT GAGAGACAAG CCTTACGCGG ACCAGTATCA TCATATGCTG TTACAGGAGG 000480 000481 GTACGTAACT TTTGGAACTT TAGGCTGAAA AAGTTCAAAT ACACATGAAG GTATAAGCAT ATAAAGATAA ATGTGAACAT 000560 000561 GTTTTGCATA CTGGCCTAAT TCCAATTTCT AGAGGAAGCA ACCATTAGCA GTTTGAAACC ATTTGTTGTA TATTGTTCCA 000640 000641 GACTCATTTC CGTGCACATA GAAAGTCTAA TTTTGTCTTT ACAGAAATGA CATCATGCTA TGTCTATCGC CCTGCACTTT 000720 000721 GCCTTTTCCA CTTACAATTT CATATCTATC CACCTATCTA TCCATTATCT ATCTATCCAT CTGTCATCTA CCCATTCATC 000800 000801 TTCCATCATC TGTGCACCTG TGTATCTACA TATCCATCAC CTGACCATTC ATCTTCTATC CATTTATCTA TCATCTATCC 000880 000881 ATCCATCTTC TATATATTAT CTATGTATCT ATCCATCCAT CATCTATTAT CTATCTATCT ATCTATCTAT CTATCTATCT 000960 000961 GACACCTATC TCTTATTGTT GTCCTTCCAT TCCTGTAGAT ATGGACCAAC TTCTTCCGTC CTTCTTTTTC TTCTACTTCT 001040 001041 CTCTTTCTTT CTTCTTTCTT TCTTTCTCTT TCTTTCTTTC TTTTTCTCTC TCTTTCTCTC TCTCACTCTC TCTTTCTTTC 001120 001121 TTTCCTCTCG ACCCTGTTTA TTGATAATTC AACAGAACCA GTTTGAAATA TGGAGAAATT AGGTCAACTC TACACTTTCA 001200 001201 CATGGCTTAT TTTCAGCTTC CAATCTTAGC TAGTGACATG ACTCTTTCTT CCAAGTCGAG GTCTTGCAGC ACTTGCCTTC 001280 001281 ACTCCCGTAG CTGTAGTTAG ACAGCACCTT AGGCTTGGGT CGACCCTCGG TGAACTCTAT GCCGTGTCCC GCCGCGCCAC 001360 001361 AGCACAGCTT TCTCCTCATT GTCTTCTGGC TCTGACTGTA GACATGGAAA AAGCAGAGTC AACCTGAATC TTCTCCCTTG 001440 001441 CACGAGGCCA ACTGCTGCCT GAATCATCAT AGGATTCTTT ACTTTCTCTT GAAGATAAAC AACTTCACCA GAAAATGTCC 001520 001521 AAGTGTTGTT CAGCAATTGA GAGTTTCTTT TGCTATGTTT GTTTTCATCA CTTTTACTTC ATACCTTTTT TTTTTCATTT 001600 001601 AATTTTGTGT CGTTTTTCTC AAGGCTGACA CATCACAAAC TCTGTTTTCA ACAGTCCGTA TTCCACATTC ATTGCTTCTA 001680 001681 ACATGGAGCT AACTTCTGCA ATGATGTGGC CACCACTGGA ACAGGAAGGT TGCTGTCAGA ATCTGGAGAA ATTCATGGGA 001760 001761 AGTTTAATGT TGCCAGTGAG AGAAACACTC TGTGAGCTGT TCTTAGGGTC TGCTGGTGAG ATGGCTCAGG AAGGGTAAAC 001840 001841 ACTGGAGGCA TGAGAATACC ATCGAAGGGG CCGACTGCAG |
Predicted Small Protein
Name | NONHSAT106136_smProtein_686:961 |
Length | 92 |
Molecular weight | 10677.5195 |
Aromaticity | 0.186813186813 |
Instability index | 65.1198901099 |
Isoelectric point | 7.07098388672 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0306293688647 |
Amino acid sequence | MTSCYVYRPALCLFHLQFHIYPPIYPLSIYPSVIYPFIFHHLCTCVSTYPSPDHSSSIHL SIIYPSIFYILSMYLSIHHLLSIYLSIYLSI |
Secondary structure | LLLEEEELHHHHHHHHHHLLLLLLLLLEELLLEEEHHHHHLLLLLLLLLLLLLLLLLEEE EEEHHHHHHHHHHHHHHHHHHHHHHHHEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooooooo oTTTTTTTTTTTTTTTTTTTTTTTTTiiiii |