NONHSAT106138
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106138 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1880 nt |
Genomic location |
chr6+:800373..804535 |
Exon number |
4 |
Exons |
800373..800551,800916..801010,802019..802135,803047..804535 |
Genome context |
|
Sequence |
000001 TAGATTTGAG TTCTAACCTC TGATTCCTAA TCGTTCATAC AGGAAAGAGA CTTGGAATTC TGTCATCATG ATGAAGAGGT 000080
000081 GGCAAAATAG AAACTTGAAG TTGTGTCTGA TTCGTTGGAT AGGTGTTTGT ATAAAGCTCA TCTTTGATAT GAAGTAGGCT 000160 000161 GAGTGGCAAT TGCTGGTTGT GAGTGGAGCC TAAACCATGG AAGGAATGAG TTGATGAGTG AATGAGTGAA TGAAAGAAAA 000240 000241 TGTAGACCGT ACACAGGCAG ATCAATGTGT GCAGCTTTTT TCTTTTGCCA GAAATTTAAA GTGTTTTCTT TAATTTAAAA 000320 000321 ACATATTAAT GCTCTTTTTA GTATTTTCTT GTAAATGTGA AATGTCTGCC AGTGCCTAGT TAAATTAAAT AGCAGTTTGA 000400 000401 AACCATTTGT TGTATATTGT TCCAGACTCA TTTCCGTGCA CATAGAAAGT CTAATTTTGT CTTTACAGAA ATGACATCAT 000480 000481 GCTATGTCTA TCGCCCTGCA CTTTGCCTTT TCCACTTACA ATTTCATATC TATCCACCTA TCTATCCATT ATCTATCTAT 000560 000561 CCATCTGTCA TCTACCCATT CATCTTCCAT CATCTGTGCA CCTGTGTATC TACATATCCA TCACCTGACC ATTCATCTTC 000640 000641 TATCCATTTA TCTATCATCT ATCCATCCAT CTTCTATATA TTATCTATGT ATCTATCCAT CCATCATCTA TTATCTATCT 000720 000721 ATCTATCTAT CTATCTATCT ATCTGACACC TATCTCTTAT TGTTGTCCTT CCATTCCTGT AGATATGGAC CAACTTCTTC 000800 000801 CGTCCTTCTT TTTCTTCTAC TTCTCTCTTT CTTTCTTCTT TCTTTCTTTC TCTTTCTTTC TTTCTTTTTC TCTCTCTTTC 000880 000881 TCTCTCTCAC TCTCTCTTTC TTTCTTTCCT CTCGACCCTG TTTATTGATA ATTCAACAGA ACCAGTTTGA AATATGGAGA 000960 000961 AATTAGGTCA ACTCTACACT TTCACATGGC TTATTTTCAG CTTCCAATCT TAGCTAGTGA CATGACTCTT TCTTCCAAGT 001040 001041 CGAGGTCTTG CAGCACTTGC CTTCACTCCC GTAGCTGTAG TTAGACAGCA CCTTAGGCTT GGGTCGACCC TCGGTGAACT 001120 001121 CTATGCCGTG TCCCGCCGCG CCACAGCACA GCTTTCTCCT CATTGTCTTC TGGCTCTGAC TGTAGACATG GAAAAAGCAG 001200 001201 AGTCAACCTG AATCTTCTCC CTTGCACGAG GCCAACTGCT GCCTGAATCA TCATAGGATT CTTTACTTTC TCTTGAAGAT 001280 001281 AAACAACTTC ACCAGAAAAT GTCCAAGTGT TGTTCAGCAA TTGAGAGTTT CTTTTGCTAT GTTTGTTTTC ATCACTTTTA 001360 001361 CTTCATACCT TTTTTTTTTC ATTTAATTTT GTGTCGTTTT TCTCAAGGCT GACACATCAC AAACTCTGTT TTCAACAGTC 001440 001441 CGTATTCCAC ATTCATTGCT TCTAACATGG AGCTAACTTC TGCAATGATG TGGCCACCAC TGGAACAGGA AGGTTGCTGT 001520 001521 CAGAATCTGG AGAAATTCAT GGGAAGTTTA ATGTTGCCAG TGAGAGAAAC ACTCTGTGAG CTGTTCTTAG GGTCTGCTGG 001600 001601 TGAGATGGCT CAGGAAGGGT AAACACTGGA GGCATGAGAA TACCATCGAA GGGGCCGACT GCAGTGCCGG GCATTGTGTA 001680 001681 GGCCACAGCC ACCAGTGCCT CCATGTTTCT GACCAAATGC TTCAGTGCCC TTTAGTGAGT GTGTCGCAGA CAAGGCATTT 001760 001761 TTGTATGAGA TCCAGGGTTC ATACCATCAT GATTCTTAGC CTTCATATTC ATCACACACT GGAAGGGACG CTGCGTGCCA 001840 001841 GGCGTTCCGG CCGGCCATCT GCGGGGGAAG GAGGAGCATG |
Predicted Small Protein
Name | NONHSAT106138_smProtein_470:745 |
Length | 92 |
Molecular weight | 10677.5195 |
Aromaticity | 0.186813186813 |
Instability index | 65.1198901099 |
Isoelectric point | 7.07098388672 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0306293688647 |
Amino acid sequence | MTSCYVYRPALCLFHLQFHIYPPIYPLSIYPSVIYPFIFHHLCTCVSTYPSPDHSSSIHL SIIYPSIFYILSMYLSIHHLLSIYLSIYLSI |
Secondary structure | LLLEEEELHHHHHHHHHHLLLLLLLLLEELLLEEEHHHHHLLLLLLLLLLLLLLLLLEEE EEEHHHHHHHHHHHHHHHHHHHHHHHHEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooooooo oTTTTTTTTTTTTTTTTTTTTTTTTTiiiii |