NONHSAT106302
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106302 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2249 nt |
Genomic location |
chr6-:961241..1101567 |
Exon number |
4 |
Exons |
961241..961568,962375..962528,1005633..1005763,1099948..1101567 |
Genome context |
|
Sequence |
000001 CTTAGTAACA CCCAGGTTAG TCCTACTTAA TTCTTACCTG CAGCCAAAGT GGACTTAGCA TCTCCTTGCA TGCCTGGTAA 000080
000081 AGTCAAGGGT TTTCAGCCAG GGCCTGTGTA TAAAGCAGAA GCAGCACAGA GTCTGGTTTG AAGCTTAGTG CTTGGGTTCA 000160 000161 GACAGTTGTG GGTTACAATC CCTTCTACAC ATGTTCTCTG TGGAAACCAT TTGGTTCTCT GTGCTTGGAA CTCGCCTGCA 000240 000241 ACGGGACAAA GCCATCTCAC CTAGACTGTT GTTATGAAGA TTGAATTAGG TGATTCTGAG AGGCATTTAT GCGTCCTCCC 000320 000321 TGAGTAACAA TCCATGAAAA GTGGGCGTCA TTGCTGAAGC TCAAGGAAGA AATATGAAAT TTGATTATAT CCTTATTCAC 000400 000401 GGCATTGGGT CACCAACTCA GCACTTTTTA TGAAAGTAGC ATCTGACCTG GCAAAGGCTG TGTCATCTTA TTACCTCAGA 000480 000481 AAGACAAATT TACGGGGTCA GACGATGGAT GGCTTGTAGA TTTCTCAATG GGCTGGAAGG AAGGAGAGAA AAAGAGAGAC 000560 000561 AGGAGAGAGT ACACATTTAA TTCTGCTTCC CCTAGGGTGA TATTTCCTTC CTCCCCTTCC AGGGTTCTCA AAAAGGCATT 000640 000641 CTAGGAAGTC CTGTAAAATA CATGCTCATA AAAATCTCAT AATTTCCACA AATTGTTGAG AATTTAAAAC TCGGTTGGGA 000720 000721 GTTTGCTGTT TCAGCCTGAG ACACCGGGGT CACGTTTCAG TGCCTGCAGT CTTGAGACAG TACCAGGCAT CTGGGATGAA 000800 000801 GCTGAGGAAA GAAGATGTGG GGGCCCTGCT GGCCTGCTCC TTCTCTCGAA AGACGCTTAC CGGCTGCTGG TGTGTCACAG 000880 000881 GGCTTTAGGA TTTGGAAAAA CAGAGGGATT TAAAAGAAGA TAGAATGGTC AGAATTTCGA GAACTGTGTG CTGAAGTGTC 000960 000961 ATCTTTAGGG TGCTCGTAAC ACGGCCTTAC AACATTAGAG GTGCTGGAAT CATGGAAGAG GCATCTGGAC TCTGTAATGT 001040 001041 CTTTCCCCCT GGAAAATCTG CTCCAGAAGT GGGGTATTGG GAGCTGTCAA CATATGAGCC ATCTTTTGCT CCGTTCAAGA 001120 001121 TGGTAGGGGC ATTCTCAACA TGCCCCTCAC TCTGATTCTG CCTCACTTTT ATTTTAGAAT TTTCCACTGC CTTTTCTGGA 001200 001201 ATGTGCTTTT TCAACCCTCA AAATCTGTAG AGAAGAAATA AGCAGAAACC GAAATGGCTT TCTGGTGTTC TCCATGCTCT 001280 001281 CAGCTTACTG GAAAATCGAG CCGCAGGCTC GAGGCTGGAC TTTAAGGCAG AGCACTGCAA TTATAGTGCT ATGGCCTTGG 001360 001361 CTTCCTTTCT CATCACCCAG GTACAGTCCT GCAGTCCTCA GAGGATGCCA GTCCCACACA GGGGGATCCT TCTCCATAGG 001440 001441 AAAACCGAGG AACAATGCAG GTTCGAGGTG CACAGTGGCT AAGCACACTC AGTCCTCAAG ATCTTTCCTC TCAAATGCTA 001520 001521 ATGCTACCTT CAGATGGGCT GCTGCCTGCT ACCATTTCAA CATTGAGTCC TTTAAGATGC CATCAGAGAG AGGGGAAGCA 001600 001601 AGAGGCCAAG AAAAATGAAA GGCCCTGCAT GTTTTTCTTC GGGAAGGCTG TGCAGTCTGC TCTGAGGAGA CAGATCAACC 001680 001681 TAGCCCTTCT CCAGGACGAA CTCCGAAAAC CACAGGAATT CACGTTCAAA GGATGACGCA TCTCAGAATC AGTGAATTTT 001760 001761 AGGAAAATGA CTCGATAACT GCAACGGTGA TGTCATGTGT GTGTCTACTT TAGAGAGCAG ATGGTCGATC TGGTGCTAAT 001840 001841 TTGCCCAATA CGGTAGCTAC GCGGCAATGA AATTCCAAAA CTGGCACAAG GCGGGCCTGG TTCCAGGATT TCCACGAAAC 001920 001921 TTGTGGGGCT ACAGGCCAGT GGAACACTTC CAAAGGGCTT GACACCAGGC CAATGGCCTT CTTAGAACAC TGTCATCATT 002000 002001 GATTCTGTAT CTACAGAAGT CATGTAACTG TGGCTGCCTC TTTTCAATGG AAACAGAGCG AAATACAACC TGGTCAGCTA 002080 002081 AATCGTGCTG ACCTTAAAAA CACTGCATCC TCTTAGGCAA CCACTTTGGC TTATAAACCA CATGTACAAT ATTCCTGCTA 002160 002161 CTTCAAACAT GACTTTTTTA ATGAGCCAAA AAAAAAAAAA ATCTAAGTTT GTAAATAAAC CGAATTCATT GCCAAAAAAA 002240 002241 AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT106302_smProtein_1454:1735 |
Length | 94 |
Molecular weight | 10575.1991 |
Aromaticity | 0.0645161290323 |
Instability index | 71.7204301075 |
Isoelectric point | 9.77703857422 |
Runs | 14 |
Runs residual | 0.0196136997212 |
Runs probability | 0.0285916168269 |
Amino acid sequence | MQVRGAQWLSTLSPQDLSSQMLMLPSDGLLPATISTLSPLRCHQREGKQEAKKNERPCMF FFGKAVQSALRRQINLALLQDELRKPQEFTFKG |
Secondary structure | LLLLLLLHHHLLLHHHLLHHHEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLH HHHHHHHHHHHHHHHHHHHHHHHLLLLLEEELL |
PRMN | - |
PiMo | - |