NONHSAT106372
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106372 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2308 nt |
Genomic location |
chr6-:1099363..1131273 |
Exon number |
3 |
Exons |
1099363..1099638,1099948..1101761,1131056..1131273 |
Genome context |
|
Sequence |
000001 GTCAGGTTTT TCTCTGTTTA AGTGGCTACA GCTGAATAGC TCAGGCCAAA CTTAAAGCTC ACACTTGAGA CTTGACGTGC 000080
000081 TCAGCTCCTG CTAAAGAGGC TCCAGGGCAG CGCCTGCCTT TCCGGGAAGC TCCCCTGAGG GTCACCGAGG CTGCAGAGAA 000160 000161 CACCCGGTGA TGACTGCATG GATCTCCTTC ATCTGCTGGG ATTCAAGCTG TGTTGCTGGG TCCTGCCTAC CCATCTGAGG 000240 000241 ACATGTCTGC TCATCACCCA TGTGCATTCT GTCACAGTGG GACCTGTGTG TGTTCCCTGC TCATTGTCGT TTCCATGGTT 000320 000321 TTGCTGATTC TATGCGATTC TTCCAGGCCA CTCCAAGTTC CACCTCTTCC ACGAAGCCCT CCTTGATTGC TGGGCCCTGG 000400 000401 TTGAACTCCT TATTAGTAAC ACCCAGGTTA GTCCTACTTA ATTCTTACCT GCAGCCAAAG TGGACTTAGC ATCTCCTTGC 000480 000481 ATGCCTGGTA AAGTCAAGGG TTTTCAGCCA GGGCCTGTGT ATAAAGCAGA AGCAGCACAG AGTCTGGTTT GAAGCTTAGT 000560 000561 GCttgggttc agacagttgt gggttacaat cccttctaca catgttctct gtggaaacca tttggttctc tgtgcttgga 000640 000641 actcgcctgc aacgggacaa agccatctca cctagactgt tgttatgaag attgaattag gtgattctga gaggcattta 000720 000721 TGCGTCCTCC CTGAGTAACA ATCCATGAAA AGTGGGCGTC ATTGCTGAAG CTCAAGGAAG AAATATGAAA TTTGATTATA 000800 000801 TCCTTATTCA CGGCATTGGG TCACCAACTC AGCACTTTTT ATGAAAGTAG CATCTGACCT GGCAAAGGCT GTGTCATCTT 000880 000881 ATTACCTCAG AAAGACAAAT TTACGGGGTC AGACGATGGA TGGCTTGTAG ATTTCTCAAT GGGCTGGAAG GAAGGAGAGA 000960 000961 AAAAGAGAGA CAGGAGAGAG TACACATTTA ATTCTGCTTC CCCTAGGGTG ATATTTCCTT CCTCCCCTTC CAGGGTTCTC 001040 001041 AAAAAGGCAT TCTAGGAAGT CCTGTAAAAT ACATGCTCAT AAAAATCTCA TAATTTCCAC AAATTGTTGA GAATTTAAAA 001120 001121 CTCGGTTGGG AGTTTGCTGT TTCAGCCTGA GACACCGGGG TCACGTTTCA GTGCCTGCAG TCTTGAGACA GTACCAGGCA 001200 001201 TCTGGGATGA AGCTGAGGAA AGAAGATGTG GGGGCCCTGC TGGCCTGCTC CTTCTCTCGA AAGACGCTTA CCGGCTGCTG 001280 001281 GTGTGTCACA GGGCTTTAGG ATTTGGAAAA ACAGAGGGAT TTAAAAGAAG ATAGAATGGT CAGAATTTCG AGAACTGTGT 001360 001361 GCTGAAGTGC CATCTTTAGG GTGCTCATAA CACGGCCTTA CAACATTAGA GGTGCTGGAA TCATGGAAGA GGCATCTGGA 001440 001441 CTCTGTAATG TCCTTCCCCC TGGAAAATCT GCTCCAGAAG TGGGGGATTG GGAGCTGTCA ACATATGAGC CATCTTTTGC 001520 001521 TCCGTTCAAG ATGGTAGGGG CATTCTCAAC ATGCCCCTCA CTCTGATTCT GCCTCACTTT TATTTTAGAA TTTTCCACTG 001600 001601 CCTTTTCTGG AATGTGCTTT TTCAACCCTC AAAATCTGTA GAGAAGAAAT AAGCAGAAAC CGAAATGGCT TTCTGGTGTT 001680 001681 CTCCATGCTC TCAGCTTACT GGAAAATCGA GCCGCAGGCT CGAGGCTGGA CTTTAAGGCA GAGCACTGCA ATTATAGTGC 001760 001761 TATGGCCTTG GCTTCCTTTC TCATCACCCA GGTACAGTCC TGCAGTCCTC AGAGGATGCC AGTCCCACAC AGGGGGATCC 001840 001841 TTCTCCATAG GAAAACCGAG GAACAATGCA GGTTCGAGGT GCACAGTGGC TAAGCACACT CAGTCCTCAA GATCTTTCCT 001920 001921 CTCAAATGCT AATGCTACCT TCAGATGGGC TGCTGCCTGC TACCATTTCA ACATTGAGTC CTTTAAGATG CCATCAGAGA 002000 002001 GAGGGGAAGC AAGAGGCCAA GAAAAATGAA AGGATAATCC TGAGTTTATA GAATTTCATC ACAGTGTGTG AAACTGGTTT 002080 002081 TTAACTTCAC TATACTGGCC CTCAGCGGTG GAGTCAACTG GGCACTGAAT AGAAAAATCT CCCTCCTCCG TGTTGTCCCC 002160 002161 AGCCCACCAC ATTTCGCCCT AAGCTCTGCC CTGCACCAAC ACCAGCCTTC TTCTGGAGTT TGGCAGCTGT GGCAACTGCT 002240 002241 GGCTGTCTCT CAACCACTTC ACAATATGTA TCAATGTATT CTACAAATCA TTGTATTTGC CAAGCATT |
Predicted Small Protein
Name | NONHSAT106372_smProtein_1865:2050 |
Length | 62 |
Molecular weight | 6803.8656 |
Aromaticity | 0.016393442623 |
Instability index | 63.568852459 |
Isoelectric point | 9.18341064453 |
Runs | 10 |
Runs residual | 0.0111173921236 |
Runs probability | 0.0192545486663 |
Amino acid sequence | MQVRGAQWLSTLSPQDLSSQMLMLPSDGLLPATISTLSPLRCHQREGKQEAKKNERIILS L |
Secondary structure | LLLLLLHHHHLLLLLLLLHHHEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLHHHL L |
PRMN | - |
PiMo | - |