NONHSAT106397
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106397 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2513 nt |
Genomic location |
chr6+:1188313..1191710 |
Exon number |
5 |
Exons |
1188313..1190312,1190442..1190555,1191001..1191027,1191170..1191217,1191387..1191710 |
Genome context |
|
Sequence |
000001 CATCTTAATT AAAAAATTAT AAGCTATACT TTTGCCAAGG ATTCAGATGA AACATCAAAA GGGTAGAAAA GGGTGTCTTT 000080
000081 CTTTCAGTTA AAGGACAGGC CCAAGATTGG GGGATAAGAG TGGAAAATCA GGTAGGTGAG AATCCAGAGA CAGACCAAAA 000160 000161 CTGAAGCTCA TCCCTAGTGA GGGGACCTTT CCCATTTTGG AGACAGATTG TGCTGTACTG ATGACCATGT GCATAAACAA 000240 000241 GCCTCTTCTC TCCACTCTTC AACCTTGTCT TTAAAAACAG GCCTGTCCCA GCATGTGGGG AAAACATACA AAGCATGTTG 000320 000321 AACTCAGATA TGAATCTGAA TGCTGTGGAA AACAGCCAAA AAAGTGGCAT CTTCTCCACC ACTGACGATC CTTTGCATCC 000400 000401 CTCTCCTCCT TGCAGGTAAA TGAGAGCTGG AACTCAGCCT TGGCTCACAG CAGAAAACAA TTCTAACCCA GGGCGCATCC 000480 000481 ACATTCGTGG GGAAATGTTC AAGTGCTTGA TCATAGATGC AGGAAAAAAA AGTCTGATTT GTTGGCATCA GACCTAGTCT 000560 000561 TTAGATGGGA AAACTAATAA ACATCAACCT TGAAGACAAG AGACAAACAT TTCTTCTCCA GAAATATACT GACAGTGACC 000640 000641 TTATAGTCTT CAAACATTTG GGCCTTTAAA ATAAACAGAC TTTTGTAAAA TATCTAATTA ACAGCTAAAA GTTGTAAGTG 000720 000721 AAGGCTGGAA TATTGAGAAG ATAAATAATT GGATTTCATT TATCTTCAAT GCTCTAAATT TTTGCTTCTT CCACCTTTGC 000800 000801 CTATAGGATG AACACATCCT GAGAATGCAG GCCCAGGCAG AACCAGGGAC AACACAACTA GCAGACGAAG TTGAATAATG 000880 000881 ACTCTCACCC AGACCTCCCT TCACTTTGGT GCCCAGAATT TGGTCTTGTA AAAGATTCAG ACATCCATGC TTCTCTAATT 000960 000961 AGAATAGGCT TTACTTCTAT AGATAAGCAC AGGTAAACCA GGAGATTAGA ATCTATACAA TATACCTAGA ACATCTTTTT 001040 001041 AGAGCAAGTT TCACTTGAAG ATTTAGGGGA AGGGGTGTTA AGAAATGTTC TTTCACTTTA AGAGCAAGTC CAGTGTTTTT 001120 001121 AATATTGAAG TATGGATGAC TTACAGGACT ATGCCTAATT TGCAGGAAAT TTGAATATAA AACACAAGAC TTTTTGGTAT 001200 001201 TTTACTTTAT GATGGGCTTT TGGGGTCCTC ATCTGTAATC TTTCTGCAAT ACCAGCACAA CCTTTCCATT TCAGTCGAGA 001280 001281 AGTCTGGTCC ACGATGTCCT AGGTAGACCG TGAAGCTCTG AAGAACATGT GCCTTGCACT TGCTCCTGGT TCAATTTGTC 001360 001361 CATTGCTCAT CATAAATCTC AGAGACACCG GAGAGAACCA AGCATCACCA ACAGTGACTG ATATGGTTTG GCTGTGTCCC 001440 001441 CACCCAAATC TCATCTTGAA TTGTAATCCC CATAATCCCC CCGAGTCGTG GGAGAGACCT GCTGGGAGGT AATTGAATCA 001520 001521 TGGGGGTGGT TTCCCCTATG CTGTTCTCGT GATAGTGACA GAGTTCTCAC AAGACCTGAT GGTTTTATAA GCGTCTGGCA 001600 001601 TTTCCCCTGC TGGCACTCTT TCTCTCCTGC TGCTCTGTGA AGAGGTGCCT CCTATCATGA TTGTAAGTTT CCTGAGGCCT 001680 001681 CTCTACTCAG GCATAACTGT GTCAATTAAC CTCTTTTCTT TATAAATTAC CAGACTTGGG TATTTCTTCA TAGCAGCATG 001760 001761 AGAACATATG AATACAATGA CCAGTTATGG ATGAGAAGTG CCCAACTGCA CAATCTTATC GATTTCATAC CACCAGGTCT 001840 001841 CACAGAAATG GTACGGAGAT GTCTCAAGCA AGATCAAATC AGAAAAATCA TGACTCCATG AGGAGCCAGG CACAGTGACT 001920 001921 CCCACCTGCA ATCCCAGCTA CTCAGGAGGC TGAGGCAGGA GAATCACTTG ATCCCTAGGA TTTGAAGCTG CAGTGAGTTA 002000 002001 GCTCTGTAAA CATATGTCGA AAATTAATTC TATATGCTAC TTCCCCAAAC ATTATTTTCT AATTATCTTC CCAAATGGCT 002080 002081 AGTTAGATGA AAATCAGTTG TCTCTTGTAC CATTCAGGAT GGAAGCAAGG CTTGAGGACA CATGATGGGG TTGGAATTTA 002160 002161 TTATCTCCAA GGTCCTTTCA GCTCTAATTC CAAGAAAGTG CGACACAACC TGTCCACAAC ACTCTTGAAG ATGCTCAGCC 002240 002241 CGGCCATGCC TGCCAGTGTC CAGAGACACT GAGAGGGCCT GGGTGCCAGG CTGCCATGTA GGGCCGGGGA GGAGCCTACA 002320 002321 CAGGACGGTG CATCGGCAAG GAATGAGAAG TCAGAAAACT CTCCAAAGAC ACCTCAAAGG ATTCTGGTCG GCCAACCAAG 002400 002401 CACCAAGTGG TTTGTTTATG GGGCAGGAGA ATACGTATAA GTGGATGAGG CGGGGCCTTG GGAGAAATCC ACTCTGAAGT 002480 002481 GAGCCCAGAT TATAGACCAT CTGGAAGAGC AGC |
Predicted Small Protein
Name | NONHSAT106397_smProtein_1757:1900 |
Length | 48 |
Molecular weight | 5751.7101 |
Aromaticity | 0.0851063829787 |
Instability index | 56.6042553191 |
Isoelectric point | 9.09857177734 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0231029348677 |
Amino acid sequence | MRTYEYNDQLWMRSAQLHNLIDFIPPGLTEMVRRCLKQDQIRKIMTP |
Secondary structure | LLLEEELHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |