NONHSAT106410
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106410 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2551 nt |
Genomic location |
chr6-:1219324..1233001 |
Exon number |
6 |
Exons |
1219324..1220776,1221922..1222157,1222291..1222411,1222507..1222842,1229424..1229678,1232852..1233001 |
Genome context |
|
Sequence |
000001 CTGCATGTTT ACAGTGGGGA CTGTCCTGTG CACTGTAGGA TGTTTAGAAC ATCCCTATCC TCTATCCACT GAGTGCCAGG 000080
000081 AGCACCCCTT CCTTCAACTG TGATGACCCA AAATGTCTGT AGACATTGCC AGATGTCCCC TTGATGGGGT TTCCCATTAG 000160 000161 GCTGAGCTCC TCATCCGCAG GGGTTGAGAC TGGTTCGTCT TTGCGTGTTC AGTGCCTGGC ACATAGTGGG CAGTCCATCT 000240 000241 TATTGAAAGA GTCAATGTCT TCCATGTATT TTGCCACCTG AAATCCATAG CACAGAGCTA GAGTTATAGC AGGTGCCAAT 000320 000321 AAACACATGT TGATGAATTG TTAACTGATG AAATGAGAGA AAGGAGAAAC ACCCTTGCTT GTAATCTGGT GACAAATTGG 000400 000401 AACCCCTCCC ACTCACAGGG GGGAGTGTGG AAAATGAGCT TGCTCCTACT CTCATGAGAG AAATCAACAG TTTTGATAAT 000480 000481 TGCTACAAAA GTAGTAACAA TCCTCCCAAA ATGACTTTAG ACAAACAAGA GCAACAAAAC CAAGATTTAA CATTATCATT 000560 000561 ATGATTAACG AAATTTATGC AACCCATAAG GCTAACTCTC AGGTGGAAAG AAAATTCTAT TGAAAACTAA CAACTCTGGT 000640 000641 CTCAGTTCTT TTTAAAATCG GAGTTAAAGA GCATAATTGG ATTGTTTGCA ACTCACTTGA TAAATGCTCG AGGAGGTAAA 000720 000721 TACCTGGTTC TTCATGATGT GAACAAAAGA AAAGTAAAAT TGGAATTAAA GGAATACTTT AGGCAACTCA CTTCACCAAT 000800 000801 ACTGGCCTCA GATTGCTAAT CTTGTACAAA CTGGGGGTGG TGATTGGAAA AGGTGATCAC TATGAATTTT AAGACAGGCT 000880 000881 ATATATTTAC AAAGAAAATA AATTTGCCAC TAAATCCTTT TTGAAACAAG GTGGGTATAA ACAAACGGTT AGACACAAAG 000960 000961 TTTTATTTCA GGTAGACATC ATAAATTTGG ATGATGGTCA TCCTTGACCC AGATTTCTGG ATTTTGTTAA AAATGTGGAA 001040 001041 AATACTTCTG CAATTACAGT GGTTGGATTT TGGTTTCCTG AGAATGTAAC AAGTTTTAGG CTCTCCAATT ACCTTAGCCA 001120 001121 TTCTGATGGC TCTCCAATGG ATGCATCACA GCCATTTCAA ACTCAGCACA TCCAAAGTGT CATAACACAA CTGGACTCTT 001200 001201 TTTTCCCCAC ACAGTTCGGT TCCTTTTCCA ATGCCTTTAT TTCCATGAAT GGTGTCATTA TTTTTCTAAC TGAGTAGTTT 001280 001281 TAGAACCTTG AAACAATATT CTGTATTTTT TCTCTCTCTT CTCGTATATT GGATGATGGC GATTCCTTGC TGTGTCTGTA 001360 001361 AGACTTCACA TCAGTCCTCA ATATACTGAT AAGTTTCTCC TAAACAGGAC TGATAATGCT GATATCAAGT TGGAACGATT 001440 001441 TGACCAGGAG CCCCAAGACA AGACCGCATC AAAACTAGAA TAACTGTAAT ACTTTAAATC AGCCTTTGCC TCAAAAGTAA 001520 001521 CTTCCGGGGC CTATTCTTGT CCATCTGTCT TACCATCCAT CCATCCATCC ATCCATGCAT CCATCCATCC GTCCATGCAT 001600 001601 CCACCTCCCT ACCTTCATAC CTACAGACTG ACCCATCTAT GTCTCAACAT TGTGGACGTT TGGACTGGAT ACATCTGTGT 001680 001681 TGGGAGGGCT GTGCTGTGCA TGGTAAGATG CTTCACAGTA TCTGTGACCT CTGCATACCA TGAGCCAGCG GCACCCCCTC 001760 001761 CTCAGTTGTG GCAACACGAA ATGCCTCCAG ACATTGCCGC ATATCCCATG GGGGCTGAAT CTGTCCCCTG CTTGAGAACC 001840 001841 ACTGCTCTAT CCTATCTCCA GTGCCACTCT ACAAATTCCG TAAAACTGTT GAAAATATGT ATCATTTTAT TCTAAAATAT 001920 001921 GCTAGTAATG TCTTTTCAAA TTCAGTCTTC TGGAGTCAGT GTTATAATAT TCAGCATGAA TTTACCATCT CTATTTATTT 002000 002001 ACTTACTTTA AAAGGCCAAG TGGAGAAATT TTTGGACGAC CCTTATCTGT AGCTTCTGGT TAGAGAATTT AACATAATAA 002080 002081 GGTTTTAAAT GGCATCAAAT AAAGAGTTTT GCCCAATGGG AATTGGAAGG CATTTTATGT ATAAATGTCT TGGGTAAATC 002160 002161 ACCCAGGTCT GCCACTGTGC TTGTTCTGAG AAGCACATTT CAAAGGTTCT CTAAGATTTA AATTTTTCAG TTCTAAATGA 002240 002241 GAAGAATAAT TGTGTCTATC TCATAGGATT GTGGTAAGCA CTAAATGAAT ACTTCTAAAG CCCTAAAGCC CTGGACAGAG 002320 002321 GCCTGGCATA TTGTGACGAC ATGATGATGT CCACTCTCAG CTGGAAATAG AAATGGCAGG CTTGCTGTGG TTGAAGTGGG 002400 002401 GTGGGGGGTC TGGACCCACC CACGAAGACC TCCCCTTCAC ATGAGGCCCA GCTGCACTTT GGCATGGACC CAGCTACCAG 002480 002481 CTATGCTTGT CATCCTGTGG CTGCCCTCAG CTACTCCTGT GCAGAAGTCA GTGAGTGTGC ACCTATATCA T |
Predicted Small Protein
Name | NONHSAT106410_smProtein_1136:1276 |
Length | 47 |
Molecular weight | 5171.7658 |
Aromaticity | 0.152173913043 |
Instability index | 44.1847826087 |
Isoelectric point | 4.30987548828 |
Runs | 9 |
Runs residual | 0.0342908902692 |
Runs probability | 0.0260947221731 |
Amino acid sequence | MDASQPFQTQHIQSVITQLDSFFPTQFGSFSNAFISMNGVIIFLTE |
Secondary structure | LLLLLLLLHHHHHHHHHHHHLLLLLLLLEEHHHEEELLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii |