NONHSAT106420
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106420 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2245 nt |
Genomic location |
chr6-:1261703..1269354 |
Exon number |
5 |
Exons |
1261703..1263424,1263860..1264061,1267917..1268090,1268218..1268336,1269327..1269354 |
Genome context |
|
Sequence |
000001 GTTACTATCA TTGTCCCACT TTATAGAGAG CTCTGGGGTT ATAGGCATGA GCCACCGTGC CCGGCCCAGC TAAGCCTTGA 000080
000081 AGGATGAGAG GAAACCAGAG TTCATCAGGA GGAGGCTGGG GAAAGCTAGG GCCCGGCACA CAGTGCACAA GGGCCAGCAG 000160 000161 TGATGTGAGG AATGCCAGGG CCGAGCTCAC AGAGGAAGCG AGGCGGCAGA GCTCCATGCT CCACCTCCAG GGTCTCAGTG 000240 000241 CCTTTTTTCC TGTGCAAAGT CGATATCCAC TGAGAGACTT CAGCGTTTGC CCCTAAGGCT CAGATAGGCC ACAGTGATTT 000320 000321 TTACTGACCT ATTTGTAATA ATTTTAGATG GCACTCTGAT CAGGAAGATT GTGGTTTTGC AAACACAGAG GGTTCTTACA 000400 000401 TCACTATTAT ATGGGGAGCC CTTCTTTCCT CTGGAATCCA AACTGATAAG CGGCATGTTT GTTGGTCTAC GGGAGGATTA 000480 000481 TGGGCTCCGT AGTTTTTTTC CTTTGGTTTG ATTGGAATGC TTTAGATGAG TCTTGGGGTG TCAGAGCCTA GAGGCCTCAT 000560 000561 CAGGGACCAT CCCCTGCTTT AAATCGGTCT TTCATGTGGC AGGGTTGACC AGCAGGGCAT GGGCACATTC ATCAATATTT 000640 000641 GCTAGAGCGG CGGGGCCATT GTGGCACACG CACAACACCA GGTTCACAGG CACAAATCAT GTGAAAGCAA ATTCATCTTT 000720 000721 CTTCTGACGG GGCCACTAGA CTGGTAGGTC AAGGAAATGC TGGAGCCACA GTGGTTGCAT CTGGCACAGT CTCTCGTGAT 000800 000801 GATATCCTTG TGTACAAAAT AAAGGCATGT GGGCCAGAGG TGGTTGGGGT GGCCGTTCCC TGGCAGGTCC AGGGAATACA 000880 000881 CCCAACAAAG GCTGGTCTAA GCCATGGCCA GCAGCGGCTT TCACAGACAC TTCTGGTGCT GAGCTGCGAG CCTTAACTGT 000960 000961 GTCCTGCTCA GTGGTAAACC ACACGTTTTG AAGGACAGTC AGGATCAGGA GCCGAAAGGG CCTCACAGCA CAGGTTAGAA 001040 001041 GAAAAGGCTG AACAAGACAG AAGGCCATTT TATTTTCTAA TTTTTATTTA TTTTTCATTG TATATTTTTA AGGCATGCAA 001120 001121 CATGATGTTT TGATATATGT ATGCATAGTG AAGTGAATGC CACAGTCCAG CCAGTTAACA TATCTGCTAT CTCATGTCAT 001200 001201 CACCGTCTTT TGCAATAAAA GTGCCTAAAA TTGACTCTCT TGCCAAATAT CCAGAGTATA AAATACAATA TTCTTATCTA 001280 001281 TTAATGTCTA CAATATTATT ATCATATTGT ATTAGAATGA CATTTTAAAA GGTTAAATAA AAAGGCTCTT CACTTGGGCT 001360 001361 CAAAGAATTA ACTGCACTAG TACCCCAAGG GTGCCATGGC GCTTAGTAGC AGTGAGGATG ACGAGAATCC AGGGCTTAGG 001440 001441 GCAGGAGGTG GTTTTCATAT GTTTGTTCCG TCCATCTTTG GCTACATTAT GGTGGAATAT TTCCTAGAAT GCTGCACTGC 001520 001521 CTCGCCTTCT CTGGGCTAGG GTAACCACTT TTGGAGTACT GGCATTCAGT TTTAGGCATC ATATTTAAGA AGACAAAGAC 001600 001601 AGAATAGACC CAAAGCACAG GGACCAGATT GCAAAAGGCC CTGACACTGC CTCCAGAAGA ATGACAGAGA ACCTAGAGGG 001680 001681 TTCACAGCTA CTATCGACTC TGAGGACCAA GGAAAACAGG GCAAAGCTTG TGTTGTAAGA CTACAAGGGC AGAAGTGGGG 001760 001761 TGGAAACTAA GAAATTCTCC AGCATTCAGA GCTGTCCAAG GCAGGATGGG CTGTCCTGGG AAGCAATGAG ATCTCATCAC 001840 001841 TCAGAAGCTT GGAAGTAAAC TGGGCCTGCA CCTGCTGCAT GTGGAAACAG TGCTTTAAGT ATTTTAGGGC TGGTTTGTCT 001920 001921 GGGCCATTCC TCCAAACCCT GGGATTCTAT GAGTCCATGA CGAGTCAAGA AACTGAGGAT CTAACCTTAG CTTTGCCACA 002000 002001 AACTATCTTA GTGACCTTAA GCAGAACATT TCAATCCTCT CCATCTCATT TTTATCCTCT GCTAAAATAA GAAGTTGGAC 002080 002081 AGGATTCCCT ACAATGTTTC ATTAATTCAT ATATTCTACC ACCTTTATCA CCATGTGCTG CAGTCTCTGC AAAGTGCTGA 002160 002161 TAGTTTGTGA TCTCCTCCTT CTTTCATGTA CACCAAGAAA GGGGTTTAGG AGATAATGTC TTAACTGACA TTGTAAGACC 002240 002241 TGCAC |
Predicted Small Protein
Name | NONHSAT106420_smProtein_83:295 |
Length | 71 |
Molecular weight | 7629.4468 |
Aromaticity | 0.0714285714286 |
Instability index | 75.9142857143 |
Isoelectric point | 10.0608520508 |
Runs | 11 |
Runs residual | 0.0123055162659 |
Runs probability | 0.0408456584928 |
Amino acid sequence | MRGNQSSSGGGWGKLGPGTQCTRASSDVRNARAELTEEARRQSSMLHLQGLSAFFPVQSR YPLRDFSVCP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEELLLLLHHHHHHHHHHHHHHHHLHHHHLLLLLEEEELLL LLLLLLEELL |
PRMN | - |
PiMo | - |