NONHSAT106428
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT106428 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1553 nt |
Genomic location |
chr6+:1272322..1276307 |
Exon number |
7 |
Exons |
1272322..1272490,1272791..1273020,1273151..1273420,1274540..1274813,1275389..1275528,1275671..1275718,1275886..1276307 |
Genome context |
|
Sequence |
000001 CAGACAGAAA ATATTTTTTG ATTGCTTCTG TATTGAACTT GTACAGACCT TTATTTCTTG TCATTATTCA CTGAACAATA 000080
000081 CAACAACTGT TTACCTAGCC TTTACATGTA TTAGTTATTC TAAATAATCT AGAGATGATT TAAAGTACAC AGGAGGGTGT 000160 000161 TTCTAGGTTG GAAGAGGGCC AAAGCTGTCC ATCTTGCAGA CGGACAGGAG GGAGCCAGGA CACAGCTCGG CTTGCTTGTG 000240 000241 CCCAGAGAGA GAAAGAGTGA AGCTGCTGAA CCCGAAGGCA GGGGAGAGCC AGCCACACAG TTGTGGGTGG GAGCCACTGG 000320 000321 ACTAAGCAGC CAAGACAGGG TGAACAGTGT AGGAAAGCTG CTGATGAGAG GACAAAGTAA AAGAGCTAAT ATAAGTAAGG 000400 000401 GTGATATTTG GTGTAGTCAT GGACCTGACA CCCCACAGAC ACTGAAGGAT GACTGTATAT TATTATTGGG TTATTCCTTA 000480 000481 TATGTTCATC TTTGCAATTA GACTATGAAC TGATCTAACG TGGAAATGGT TTCTCACTCA TCTTTGTATC TTCCCCTGCC 000560 000561 TCTGAGAACC AGGTATGTGC TCAAAACTGC CTGTGGGCAT TGCAATAGCA AAGATATGGA ATCAATATAG GTGTCCATCA 000640 000641 ATGGATGAGT GGATAAAGAA AATGTGGTGT AAAGCTCCTT GAACTTAATC CAAAAGCTTC AGCTGGCCCC CATTTCACAT 000720 000721 CAAATGAAGT CCAAAACCAA GATCTGCCAT TCAAAGGCCA TAATCCACTC GCCTATCTCT CTCATTGTGT CTCCTGCCTT 000800 000801 CCCCCAAGAG AAGCTTCCTC CAAGGTGCAC CCGAAGAGAG AGCAGGCATT TGTCCAACAG GCTGTGTTTC TTCTCACCTC 000880 000881 CTGTGCCTCG TTACGGTGCA GTGGTACAAG TGTGCGTCCA GACACCTAAG GAGGCCAAGC CACAAGGGAA AGAAATCCTA 000960 000961 ACACACGCTA CAATGTGGGT GAACCCGGAG GACATGGTAC TAAGTGAAAT AAGCCAATCA CAGAAGGACA ACTACTGTGT 001040 001041 GATTCCACTC ACATGAGGCT CCTAGAGTAG TTAAATGCAT AGACTCTTAA TGCCATTCAC CTGTACACTT AAAATAGTTA 001120 001121 AGATGGTCCA TCATTAATGT CCATTTTCCT CATTATACTC TAAATTCTAG AAGGCTGGGA CATGCCTGTC TTGCTGACTC 001200 001201 TTACACCCAG TATCTGGTAT ACTGCCTGCC ACTTATAGTA TCATCCAGAT GCCCCAGTAA GAGTTGGTGA AGTGGATCAG 001280 001281 TTAAGCCATG GGGAGAAAAC ATTTGAAGAA GGAGTGAGCG ACCCCAGACC ACCAAGCTCT CTGAAAAGCT AAGTAATATT 001360 001361 ATTTGGCCTA AAAAATATCC ACTGGTTTAG AAACAAGTAG ACAGCTTTTA AAAGTTAAGG GAGTCTTAGA ACAATAATCT 001440 001441 TGGTCATGAA AGCGAGAAGG AGAGAGTGGA AGGTCCAGGG AAAAGAGGCC TCAGTAGTGC AGTGGGTGAG TGGGTGACAG 001520 001521 GTCTGAGAAG AGCAGTGTGA TACATTTTCT TTA |
Predicted Small Protein
Name | NONHSAT106428_smProtein_1445:1516 |
Length | 24 |
Molecular weight | 2716.1285 |
Aromaticity | 0.0869565217391 |
Instability index | 41.7652173913 |
Isoelectric point | 11.0000610352 |
Runs | 6 |
Runs residual | 0.0331262939959 |
Runs probability | 0.0313696048991 |
Amino acid sequence | MKARRREWKVQGKEASVVQWVSG |
Secondary structure | LLLHHHEEEELLLLLEEEEEELL |
PRMN | - |
PiMo | - |