NONHSAT106524

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT106524

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

6814 nt

Genomic location

chr6-:1585165..1624902

Exon number

5

Exons

1585165..1590367,1592239..1592732,1593901..1594006,1612022..1612235,1624106..1624902

Genome context

Sequence
000001 AAAGCAGGGA AACCCGGAGC CTTGTGCGCC CAGAGGGAGC GGAACGGTGG GAGTTCCCGG GGCTCGGGAC CTGCTGCCCC 000080
000081 CACCCCCACG ACCCACGCCT GCTTCGTCTC CCCCTCTTCT TCCCTAGGAC TTTCTGCAGG GCGACTGCAC CAAAGCGAAA 000160
000161 CAGAAGCTGA ACTGGAAGCC CCGGGTCGCT TTCGATGTGA GTATCTCTTA GGGCGCACGC CGCCCGCTGC GGGGCCCCGG 000240
000241 GCTGCAGGGC GGCAGCTCTC AGGGTCGGGC GCCTGAGGCG CCTGCGATGC CCAAAGCCCG GAAGGCGGGG TGCGGGAGAA 000320
000321 GTGAGGGGAG CTGGAACGAG GGACGCGGAG GCCTCTCTGG GGCCGACACC CGGGGTGGGG TGTCACCAGG AGAGAGTGGC 000400
000401 AGAAGCTCCT CCCTCACGCC CACCCCTGTG TTGCAGGAGC TGGTGAGGGA GATGGTGCAC GCCGACGTGG AGCTCATGAG 000480
000481 GACAAACCCC AATGCCTGAG CAGCGCCTCG GAGCCCGGCC CGCCCTCCGG CTACAATCCC CGCAGAGTCT CCGGTGCAGA 000560
000561 CGCGCTGCGG GGATGGGGAG CGGCGTGCCA ATCTGCGGGT CCCCTGCGGC CCCTGCTGCC GCTGCGCTGT CCCGGCCGCA 000640
000641 AGAGCGGGGC CGCCCCGCCG AGGTTTGTAG CAGCCGGGAT GTGACCCTCC AGGGTTTGGG TCGCTTTGCG TTTGTCGAAG 000720
000721 CCTCCTCTGA ATGGCTTTGT GAAATCAAGA TGTTTTAATC ACATTCACTT TACTTGAAAT TATGTTGTTA CACAACATCA 000800
000801 AGCCGATCCT CTGTGACTCG AACATCTCCC GCACCGAGTG GAAGTTCTGC TGCTGGCCCG GGTAGCCTGC GGCCGCCGCC 000880
000881 GCCGCCGCCG CGCTCGCCAA GTGGCCCAGG TCTCCGCCCG CCTGGTTCAG GTACCACGAG GTGAGGCGGC CTTGGTGGGC 000960
000961 CGCAGGGTGG TGGCCGGCCT CCTGGCCTCC CCCGCCGCCG CCGCCGCCGC CCCAGTGAGG GCAGAAAGAA CACCAGTCAA 001040
001041 GCAAGGGAGC ACTTCCTTGT CCTACAACCT CATCCCAGAG TCTATTTTTG TTAAAACTCC AGAAGAAGGA AGGAAACGGG 001120
001121 TAATGGCCCC CAGCTCCATC CATGTTGCTG CAGAGGACAT GATTTCATTC TTTTCTATGG CTGCATGGGA AGAAGCTTGT 001200
001201 ATTTTATTAA AGATTAAGCA AGATCCATGT TGCTGAGGAT GTTTTGTCTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG 001280
001281 TGTGTGTGTG TGTGTGTGGA GAGGGGTAGG TAGAGTATAC CGGAAGGAAG TAGGACTGTA GATGTTGAGC TTTTTGTCCT 001360
001361 CCAGAATTGA ATGTGGGCCA CGCTGGTGTT TGTGGAGTTC CATGATGGCT GAGCTGTGAT GACTGATGTT GCCAGGAGCT 001440
001441 TTGTCTGTGT GGACTCGACC CTCTGCCATG TTGCCCAGTT CTCCTTGAAG TCAGTGGAAG CTGCATGGCC TGGCCTGGCG 001520
001521 CAGCTGCAGG TGATGCAGCC ACTGTTAGGT GAGCCTGGCC TCATTCAGAA ATGATCTCCA AAATTCTTTA GAGAAAAGGG 001600
001601 GGAGACTGCT GATTAGGGAA AAATATTTCA CGTAAAGGAT CTCTTTCATG TGGCCTTTTC ACATTTTCAT GAAAAGGGAG 001680
001681 GTTTATCAAC TTTTTCCTAA GTGAGATTAT GACGCTGCCC CCGTAGGGCA CCATTCCCTA AGCTGAGTGC CGTAGAGAAC 001760
001761 CAGCAACACG GGTTATGCAA TTGTATAAAC TTGGGAATTA TGAGCGACGT TGAATTGTTT CCTGCTGCAG ACCTTTCCAG 001840
001841 AGCCTTCAGC AGCTAATGTA CCTTTTGAAA TCACAAGGTA TGGAAGGCGT CTCACAGAGT TGACCATGGG ATGATCTCCT 001920
001921 GGATTTGTGT TCTCTAGGCT TATTTTGGGA AACACCCCGA TAAGGACTGG ATGGATGGTG CACAGAATAC ACAGGGAGTG 002000
002001 TCCGAGGCTG AGGTGCTGCC CCAGTGCTTG GTTTCTGGTG TTGTTTCCCT CATGGATAGA GGGCAGGCAG GGTGGCGGCC 002080
002081 ACAATGAAAT GAAAGATTCC CTCCCGTTGT CTTGCGTAAG TGAAGTGATG GTTGCTCTCT TTTCTCTTTA AGTAGGTATT 002160
002161 AGGGGATCAT TGCCTGGTTT TCAGGCACTG AAATGGACAC GCTCCTCTCT CATGCCTGAT TGTGTAAGAA GCATTTATTA 002240
002241 ACCATGATGA GGAGCAGACG CTGCCTGGTG TGGGCAGTGC ACAGGTGAAT GAGACCTGGA GTTGCCAAGA GAAGAAAGAA 002320
002321 ACTCGTAGTG ACTTCCCTTT GATCTTGCTT TTCTGGGTGC GTTGATAATC ATCTCCACCT CAGTTACCAA ACACAAAGAT 002400
002401 TTCAGGAGTG CCTTGGCCGA AGTTCACTGC CGGCCAATCC CAGTCTTGTA ATGACTATTG TTGAAATGCT GTGGCTTTTC 002480
002481 CTTCCCTGTT CATATGTCTT GTGTGGACAG TGTCACATGC CCAGCCACCA GATCATAATA GTATGTTTAA AAGATTGCTC 002560
002561 TAAAATGGGC TTTTGGAAGG GGAGTCAATC AATCAACCAA TCAATCAAGG GAGTCATGAA TTCTCAATGT GCCTCTTTTA 002640
002641 CTTTGCGCAA TTTGAGACTT CATATCAGTC ATCTCTGTCC ATGAGAAAAC ATGATGGCAT TGTAGTTAAA GGCCTCTTAT 002720
002721 GTGCCAGTCA CTGTGCTGAG TACTAGGAGA CAGCCCGTGA GATGTAATTT CTGTCCCAAT TGAAAGAAGT AAACAGTAAC 002800
002801 AATTACAGCT GCCGTTTATC AAATACCCAC TCTGTACCAA ACACTGCTTG AAGACTGAAG GTTTGCTCTG AACAATCACT 002880
002881 CTCATATTGC TGGCAATGTT TCATACAAAG ATTTTTTGAA TGGAATTGAC TATAATTGTT GGGGAATAAA TGAAATTGCA 002960
002961 AAGCACCTTG TACAGCATTG GCCTTGTGGT AAGAGTGAAG GAAAATAGCC TTCACTGCCC ATTGTAATTA TAATGCCGGG 003040
003041 CAACATCTGT TTCTTATTCA TCTTTGTCTT CTCAGTACCT GGCCCAGAAC ACACACTTGA TAAATGTTTG TTAACAATGA 003120
003121 ATGATGGGCT GGGCGTGGTG GCTCACGCCT ATAATCCCAG CACTTTGGGA GGCCCAGGCA GGCAGATCAC TTGAGATCAG 003200
003201 GGGTTCCAGA CCAGATTGGC CAACATGGTG AAACACCGTC TGTACTAAAA ATACAAAAGT TAACCAGGTG TTGTGGTGTA 003280
003281 CGCCTGTAAT CCTGGCTACT CAGGAGGCTG AGGCAGGAGA ATTGCTTGAA CCCAGGAGGC AGAGGTCGCA GTGAGCCGGG 003360
003361 ATTGTGCCAC TGCATTGCAG CCTAGGCAAC AGAGCAAGAC CTCGTTTCAA AAAACAAAAA AACCAACCAA CAAACAAAAA 003440
003441 TCGATGATGA TGACTCAAGT AAGAAATAAC AATTAACTAC TCGGCAAAAT AGAGTAGATA GACAGTCACT TTCATACTTT 003520
003521 TAACTTTTAG ACTTGTTTAT TTTGCTCATT TGGAGAACTA ATGACGTGTG ACTGACGTGG AGACTTGAGT CGAGTCATCA 003600
003601 GATAAATCAA GGCAGTGCCG GGTATTAGCA CGCATTATCT TGATAATTCA GGCACAGATA GTTTGGGGCC ACATATTCTT 003680
003681 TGGAAAATGT CCTTACTTTC ACGTGAATTT CCACATTGTG GATTGGCGGA AGTTCGGGAA CATTACAAAC GCTTACCATG 003760
003761 AACTCAGGAC AACTTGCTCT TAGATGTGGG TCTATATTTT GCAGGAAGGG TTACCATGGG ATTGATTCTG AGCAGGCAAG 003840
003841 GTTCTGCATG GAGATGGCTT TAGGATAAGT ATATGGGTTT TCCTGTGATG TCGACAGCAC ATGATATTTC CATAAAGGTC 003920
003921 ACTTAACATA AGCGCACAAA AGCCTTCATG GGTTGTAACG CTGCAGCTGC CAAGCCAGGT GAGCCAAGTC TCACTGCCTG 004000
004001 GGGAATTGTG CCGGAGTCAA GACTAGAACC GGCGCTGCCT GGTGTTAACA GGAGCAAACA GGTTCGTGGC AGTGATCTAT 004080
004081 GGAGTCTCAT TTCCAGCTCC TTTATTCACT TGTTCATAAC TTTCTGCCAA ATTCTTTGAG GCTGAAAGCT TTCTTGTCTG 004160
004161 GTGCTGGGCC ATGACTGCCC AAAGGTAAAT TTTTCTGGAG AGTTTCTGCC AGAGCTATTA AGCCTTTCTT GAATCAATGA 004240
004241 AAAAAGAAAT TCTTCATTTG AATTTGTTGG CGTCGGTTCT CTGGTAATTC AGCACTTAGC CCAGTCACCC AGAAGATCTC 004320
004321 TCTCTCTCAC ACATACACAC ACACACCAAT ACTTGAATAC ACACATGCAC ACCCAACCCA CACACATAAG CAGACACACA 004400
004401 CCCAATACAC TTGCACACAA CTTACACACA TGCACACTCA CATACACCCA TACTCTCACA CACCACATAC TCATATGCAC 004480
004481 ACACACCCAA CACACACCCT CATGCACACT CTCATACACC CAGTACATTC ACTATACCAC ACACACAGAC GCACACACCA 004560
004561 CACATGAACA CACACACACA CATGCAGGGC CTACACTCTT GGTCTAGACC ATGCAAACCT GAACCACAGG GTCATTTTTC 004640
004641 CCTTGGGGGC ACTGCAGGCT CTCGCACCTG GTCCTGTGGG AAAGGGAGGC TGGAGGAGCA GACAGACTCA TCAGATCATG 004720
004721 CCCTCCATTC TTTCTCAGCA ACAAACAAAT GCACTCATTT GCCTGCTGCT TCAAAAGCAG GAGTGTGGCC TGGGTGCGGT 004800
004801 GGCTCACACC TGCAATCCCA GCACTTTGCA GGGCCGAGGC AAGATCGTTT GAGGACAGGT GTTAGAGACC AGCCTGAGCA 004880
004881 ACAAAGGGAG ACCCGTCTCT ACACAAAATT AGAAAAAAAA TTAGCCAGGT GTGATGGTGC ACACCTGTAG TCCCAGCTAC 004960
004961 TTGGGAGGCT GAGGTGGGAG GATGGCTTGA GCTTGGGAAT TGGAGGCTGC AGTGAGCTGA GATCACACCA CTTCACTCCA 005040
005041 GCCTGGACCA CACAGTGAGA CCCTGTCTCT AAAAAAAAAA AAGAAAAAAA AAAAAAAAGC AGGAGCGTGA ACTTGAATGG 005120
005121 GAACAGCAGT GAACGCTGAG TCCTGGGCAC ATTCACTCAA TGCCTGTTAC CACATAAGAG GGGGAGAGGG GCAACCCCCC 005200
005201 GGACCTACAT TTTTATATTG GTAGGAAATA GTAACCCTTG AAAACAAGAG GAAGGAGGAA GGCACTGTGG CTACACCCCG 005280
005281 GCTATGGAGG TGAGCACCAG CCTGCCTCTG TGTCGTCCTC CGTTTCCTCC ATGCCTTCCA TACTCAGTTG AGTGGATGCC 005360
005361 ACTTGTCAAG AGCTATAGTC AGTAGCAATT ACTAGCTCCA GCTGTCTGGA GGGAAAAGTG CTGGCTTGAT GAATGAAGTG 005440
005441 ACTTCTAGTC CGTCAGAGGT ATGGTTCTGG GAGAGCAACA ATCATAACTA ATAGTTTTTT ACTTAACAGA CCTTTTTACA 005520
005521 ACCCGAAACT CTCTTCACAA GGGCTCTGAA AAATAACTGG ACACTAACAT GACCTGATTT GGGAAAAAAC TGAATTCTCT 005600
005601 AATTTTCCAT ATTGAAAAAT TATATTGCCT TGTTCTTTTA TTCTGCAAAA GGAAAACAGA AAAAGGCAAA AGTCACAGAA 005680
005681 TGGAAAAGGG CAAAGAATTT AAGAGGATGA ATTGAAGAAG AAAATAAAAT GCTGAGGTTG GCTTGGCTTG TTCCAGGGAG 005760
005761 AACCTGGCTG GAACAACCGG GTGTTCATCG GGAATTCAGA GGCTGTGCCG ACCCTCCAGG GAGCCAGTGC CCGACCTGTC 005840
005841 CTCCGGGTGG GGACTGAGGA TGCAGAGAAT GGCTCAATCG GCTGCACGAG AGGCCCTGCC CTGTGGGCGC TGAGCAGTAG 005920
005921 CCATGGTCCC CTGCCGGGTC GGCAGAGTTA CCTTTGCTGC TGCATCCATG AAAGACCCTT TCTCCTTGAG CTAGTCGGGG 006000
006001 AACCCACGGT GGCCAAGGAA ATGCACCACC TCCTTCTACA GACACTTTCC TCCTGGCTGC AGGGGCTTTC TGGTGAGTGT 006080
006081 TTTAGTCTCT TCCCAACTGT TTCTTTTAAC CAGATTTCAC CTGCATGAAA GCCCCCAGTA GGGTGTCAGA ATGTGGGGAG 006160
006161 AGTGGGGGGA TACTTGGCGG GATTGCCCGA GCCTCAGTCC CTAGCCTGTC ACCTCGCTGG GGAGTGTGGC AGTTCAGGGC 006240
006241 CATCATCTTC ACGGCAGCTA CGTTCTGCAG AGTATTCCAT GCTAAAGCCA GGAGCTTCTG GGGGAGGGTG GTGGGTTTCA 006320
006321 CATGGATCCT AGCATTTCCT GCCCGTGTTA CAGGCATGTG AAACACTCGG TTCTTCTCTC TTATGAAAAG AACTAGAACA 006400
006401 AATGGAGTCC GTACATGTGG CCTTCGGGCA CTGGGGTGGC TCAGAGGGGA GGAGAGGTGC TTAGAGTTGG TTTTTTGGAC 006480
006481 AAGACCCAGT GGAGCAATTC TAATTCCCTC TCTGTTGAAT GACAGCCAAC ACTCTTGTGC TGTTGATCTT CTCACCTCCG 006560
006561 TATTTGTTTA TGAATTATCT GGAAAGGTGA TTGTATGAGC TTACCGAGAC AGAGTTCCAG GGGCCCCTGG GGGAAGCCGG 006640
006641 GCAATGTCTC CACAAGCAAA GCCATGTGGG AGGGCCAGTG GGACACGCAG AGGAAAGCCC CTGTTCCTTG CCACCGAAGA 006720
006721 GAGGGTTTTC ATGCTCTGAA TTGGTACAGT GAGCTCCCTA TAAGCACTAA ACTCACCCGC TGAAACATTG GCTCTTTATT 006800
006801 TTGCGCAATT TAAG
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Predicted Small Protein

Name NONHSAT106524_smProtein_491:757
Length 89
Molecular weight 9398.7829
Aromaticity 0.0454545454545
Instability index 96.2465909091
Isoelectric point 9.85272216797
Runs 13
Runs residual 0.0163636363636
Runs probability 0.0468251056486
Amino acid sequence MPEQRLGARPALRLQSPQSLRCRRAAGMGSGVPICGSPAAPAAAALSRPQERGRPAEVCS
SRDVTLQGLGRFAFVEASSEWLCEIKMF
Secondary structure LLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEL
LLLEELLLLLEEEEEELLHHHHHHHHLL
PRMN -
PiMo -