NONHSAT106524
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106524 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
6814 nt |
Genomic location |
chr6-:1585165..1624902 |
Exon number |
5 |
Exons |
1585165..1590367,1592239..1592732,1593901..1594006,1612022..1612235,1624106..1624902 |
Genome context |
|
Sequence |
000001 AAAGCAGGGA AACCCGGAGC CTTGTGCGCC CAGAGGGAGC GGAACGGTGG GAGTTCCCGG GGCTCGGGAC CTGCTGCCCC 000080
000081 CACCCCCACG ACCCACGCCT GCTTCGTCTC CCCCTCTTCT TCCCTAGGAC TTTCTGCAGG GCGACTGCAC CAAAGCGAAA 000160 000161 CAGAAGCTGA ACTGGAAGCC CCGGGTCGCT TTCGATGTGA GTATCTCTTA GGGCGCACGC CGCCCGCTGC GGGGCCCCGG 000240 000241 GCTGCAGGGC GGCAGCTCTC AGGGTCGGGC GCCTGAGGCG CCTGCGATGC CCAAAGCCCG GAAGGCGGGG TGCGGGAGAA 000320 000321 GTGAGGGGAG CTGGAACGAG GGACGCGGAG GCCTCTCTGG GGCCGACACC CGGGGTGGGG TGTCACCAGG AGAGAGTGGC 000400 000401 AGAAGCTCCT CCCTCACGCC CACCCCTGTG TTGCAGGAGC TGGTGAGGGA GATGGTGCAC GCCGACGTGG AGCTCATGAG 000480 000481 GACAAACCCC AATGCCTGAG CAGCGCCTCG GAGCCCGGCC CGCCCTCCGG CTACAATCCC CGCAGAGTCT CCGGTGCAGA 000560 000561 CGCGCTGCGG GGATGGGGAG CGGCGTGCCA ATCTGCGGGT CCCCTGCGGC CCCTGCTGCC GCTGCGCTGT CCCGGCCGCA 000640 000641 AGAGCGGGGC CGCCCCGCCG AGGTTTGTAG CAGCCGGGAT GTGACCCTCC AGGGTTTGGG TCGCTTTGCG TTTGTCGAAG 000720 000721 CCTCCTCTGA ATGGCTTTGT GAAATCAAGA TGTTTTAATC ACATTCACTT TACTTGAAAT TATGTTGTTA CACAACATCA 000800 000801 AGCCGATCCT CTGTGACTCG AACATCTCCC GCACCGAGTG GAAGTTCTGC TGCTGGCCCG GGTAGCCTGC GGCCGCCGCC 000880 000881 GCCGCCGCCG CGCTCGCCAA GTGGCCCAGG TCTCCGCCCG CCTGGTTCAG GTACCACGAG GTGAGGCGGC CTTGGTGGGC 000960 000961 CGCAGGGTGG TGGCCGGCCT CCTGGCCTCC CCCGCCGCCG CCGCCGCCGC CCCAGTGAGG GCAGAAAGAA CACCAGTCAA 001040 001041 GCAAGGGAGC ACTTCCTTGT CCTACAACCT CATCCCAGAG TCTATTTTTG TTAAAACTCC AGAAGAAGGA AGGAAACGGG 001120 001121 TAATGGCCCC CAGCTCCATC CATGTTGCTG CAGAGGACAT GATTTCATTC TTTTCTATGG CTGCATGGGA AGAAGCTTGT 001200 001201 ATTTTATTAA AGATTAAGCA AGATCCATGT TGCTGAGGAT GTTTTGTCTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG 001280 001281 TGTGTGTGTG TGTGTGTGGA GAGGGGTAGG TAGAGTATAC CGGAAGGAAG TAGGACTGTA GATGTTGAGC TTTTTGTCCT 001360 001361 CCAGAATTGA ATGTGGGCCA CGCTGGTGTT TGTGGAGTTC CATGATGGCT GAGCTGTGAT GACTGATGTT GCCAGGAGCT 001440 001441 TTGTCTGTGT GGACTCGACC CTCTGCCATG TTGCCCAGTT CTCCTTGAAG TCAGTGGAAG CTGCATGGCC TGGCCTGGCG 001520 001521 CAGCTGCAGG TGATGCAGCC ACTGTTAGGT GAGCCTGGCC TCATTCAGAA ATGATCTCCA AAATTCTTTA GAGAAAAGGG 001600 001601 GGAGACTGCT GATTAGGGAA AAATATTTCA CGTAAAGGAT CTCTTTCATG TGGCCTTTTC ACATTTTCAT GAAAAGGGAG 001680 001681 GTTTATCAAC TTTTTCCTAA GTGAGATTAT GACGCTGCCC CCGTAGGGCA CCATTCCCTA AGCTGAGTGC CGTAGAGAAC 001760 001761 CAGCAACACG GGTTATGCAA TTGTATAAAC TTGGGAATTA TGAGCGACGT TGAATTGTTT CCTGCTGCAG ACCTTTCCAG 001840 001841 AGCCTTCAGC AGCTAATGTA CCTTTTGAAA TCACAAGGTA TGGAAGGCGT CTCACAGAGT TGACCATGGG ATGATCTCCT 001920 001921 GGATTTGTGT TCTCTAGGCT TATTTTGGGA AACACCCCGA TAAGGACTGG ATGGATGGTG CACAGAATAC ACAGGGAGTG 002000 002001 TCCGAGGCTG AGGTGCTGCC CCAGTGCTTG GTTTCTGGTG TTGTTTCCCT CATGGATAGA GGGCAGGCAG GGTGGCGGCC 002080 002081 ACAATGAAAT GAAAGATTCC CTCCCGTTGT CTTGCGTAAG TGAAGTGATG GTTGCTCTCT TTTCTCTTTA AGTAGGTATT 002160 002161 AGGGGATCAT TGCCTGGTTT TCAGGCACTG AAATGGACAC GCTCCTCTCT CATGCCTGAT TGTGTAAGAA GCATTTATTA 002240 002241 ACCATGATGA GGAGCAGACG CTGCCTGGTG TGGGCAGTGC ACAGGTGAAT GAGACCTGGA GTTGCCAAGA GAAGAAAGAA 002320 002321 ACTCGTAGTG ACTTCCCTTT GATCTTGCTT TTCTGGGTGC GTTGATAATC ATCTCCACCT CAGTTACCAA ACACAAAGAT 002400 002401 TTCAGGAGTG CCTTGGCCGA AGTTCACTGC CGGCCAATCC CAGTCTTGTA ATGACTATTG TTGAAATGCT GTGGCTTTTC 002480 002481 CTTCCCTGTT CATATGTCTT GTGTGGACAG TGTCACATGC CCAGCCACCA GATCATAATA GTATGTTTAA AAGATTGCTC 002560 002561 TAAAATGGGC TTTTGGAAGG GGAGTCAATC AATCAACCAA TCAATCAAGG GAGTCATGAA TTCTCAATGT GCCTCTTTTA 002640 002641 CTTTGCGCAA TTTGAGACTT CATATCAGTC ATCTCTGTCC ATGAGAAAAC ATGATGGCAT TGTAGTTAAA GGCCTCTTAT 002720 002721 GTGCCAGTCA CTGTGCTGAG TACTAGGAGA CAGCCCGTGA GATGTAATTT CTGTCCCAAT TGAAAGAAGT AAACAGTAAC 002800 002801 AATTACAGCT GCCGTTTATC AAATACCCAC TCTGTACCAA ACACTGCTTG AAGACTGAAG GTTTGCTCTG AACAATCACT 002880 002881 CTCATATTGC TGGCAATGTT TCATACAAAG ATTTTTTGAA TGGAATTGAC TATAATTGTT GGGGAATAAA TGAAATTGCA 002960 002961 AAGCACCTTG TACAGCATTG GCCTTGTGGT AAGAGTGAAG GAAAATAGCC TTCACTGCCC ATTGTAATTA TAATGCCGGG 003040 003041 CAACATCTGT TTCTTATTCA TCTTTGTCTT CTCAGTACCT GGCCCAGAAC ACACACTTGA TAAATGTTTG TTAACAATGA 003120 003121 ATGATGGGCT GGGCGTGGTG GCTCACGCCT ATAATCCCAG CACTTTGGGA GGCCCAGGCA GGCAGATCAC TTGAGATCAG 003200 003201 GGGTTCCAGA CCAGATTGGC CAACATGGTG AAACACCGTC TGTACTAAAA ATACAAAAGT TAACCAGGTG TTGTGGTGTA 003280 003281 CGCCTGTAAT CCTGGCTACT CAGGAGGCTG AGGCAGGAGA ATTGCTTGAA CCCAGGAGGC AGAGGTCGCA GTGAGCCGGG 003360 003361 ATTGTGCCAC TGCATTGCAG CCTAGGCAAC AGAGCAAGAC CTCGTTTCAA AAAACAAAAA AACCAACCAA CAAACAAAAA 003440 003441 TCGATGATGA TGACTCAAGT AAGAAATAAC AATTAACTAC TCGGCAAAAT AGAGTAGATA GACAGTCACT TTCATACTTT 003520 003521 TAACTTTTAG ACTTGTTTAT TTTGCTCATT TGGAGAACTA ATGACGTGTG ACTGACGTGG AGACTTGAGT CGAGTCATCA 003600 003601 GATAAATCAA GGCAGTGCCG GGTATTAGCA CGCATTATCT TGATAATTCA GGCACAGATA GTTTGGGGCC ACATATTCTT 003680 003681 TGGAAAATGT CCTTACTTTC ACGTGAATTT CCACATTGTG GATTGGCGGA AGTTCGGGAA CATTACAAAC GCTTACCATG 003760 003761 AACTCAGGAC AACTTGCTCT TAGATGTGGG TCTATATTTT GCAGGAAGGG TTACCATGGG ATTGATTCTG AGCAGGCAAG 003840 003841 GTTCTGCATG GAGATGGCTT TAGGATAAGT ATATGGGTTT TCCTGTGATG TCGACAGCAC ATGATATTTC CATAAAGGTC 003920 003921 ACTTAACATA AGCGCACAAA AGCCTTCATG GGTTGTAACG CTGCAGCTGC CAAGCCAGGT GAGCCAAGTC TCACTGCCTG 004000 004001 GGGAATTGTG CCGGAGTCAA GACTAGAACC GGCGCTGCCT GGTGTTAACA GGAGCAAACA GGTTCGTGGC AGTGATCTAT 004080 004081 GGAGTCTCAT TTCCAGCTCC TTTATTCACT TGTTCATAAC TTTCTGCCAA ATTCTTTGAG GCTGAAAGCT TTCTTGTCTG 004160 004161 GTGCTGGGCC ATGACTGCCC AAAGGTAAAT TTTTCTGGAG AGTTTCTGCC AGAGCTATTA AGCCTTTCTT GAATCAATGA 004240 004241 AAAAAGAAAT TCTTCATTTG AATTTGTTGG CGTCGGTTCT CTGGTAATTC AGCACTTAGC CCAGTCACCC AGAAGATCTC 004320 004321 TCTCTCTCAC ACATACACAC ACACACCAAT ACTTGAATAC ACACATGCAC ACCCAACCCA CACACATAAG CAGACACACA 004400 004401 CCCAATACAC TTGCACACAA CTTACACACA TGCACACTCA CATACACCCA TACTCTCACA CACCACATAC TCATATGCAC 004480 004481 ACACACCCAA CACACACCCT CATGCACACT CTCATACACC CAGTACATTC ACTATACCAC ACACACAGAC GCACACACCA 004560 004561 CACATGAACA CACACACACA CATGCAGGGC CTACACTCTT GGTCTAGACC ATGCAAACCT GAACCACAGG GTCATTTTTC 004640 004641 CCTTGGGGGC ACTGCAGGCT CTCGCACCTG GTCCTGTGGG AAAGGGAGGC TGGAGGAGCA GACAGACTCA TCAGATCATG 004720 004721 CCCTCCATTC TTTCTCAGCA ACAAACAAAT GCACTCATTT GCCTGCTGCT TCAAAAGCAG GAGTGTGGCC TGGGTGCGGT 004800 004801 GGCTCACACC TGCAATCCCA GCACTTTGCA GGGCCGAGGC AAGATCGTTT GAGGACAGGT GTTAGAGACC AGCCTGAGCA 004880 004881 ACAAAGGGAG ACCCGTCTCT ACACAAAATT AGAAAAAAAA TTAGCCAGGT GTGATGGTGC ACACCTGTAG TCCCAGCTAC 004960 004961 TTGGGAGGCT GAGGTGGGAG GATGGCTTGA GCTTGGGAAT TGGAGGCTGC AGTGAGCTGA GATCACACCA CTTCACTCCA 005040 005041 GCCTGGACCA CACAGTGAGA CCCTGTCTCT AAAAAAAAAA AAGAAAAAAA AAAAAAAAGC AGGAGCGTGA ACTTGAATGG 005120 005121 GAACAGCAGT GAACGCTGAG TCCTGGGCAC ATTCACTCAA TGCCTGTTAC CACATAAGAG GGGGAGAGGG GCAACCCCCC 005200 005201 GGACCTACAT TTTTATATTG GTAGGAAATA GTAACCCTTG AAAACAAGAG GAAGGAGGAA GGCACTGTGG CTACACCCCG 005280 005281 GCTATGGAGG TGAGCACCAG CCTGCCTCTG TGTCGTCCTC CGTTTCCTCC ATGCCTTCCA TACTCAGTTG AGTGGATGCC 005360 005361 ACTTGTCAAG AGCTATAGTC AGTAGCAATT ACTAGCTCCA GCTGTCTGGA GGGAAAAGTG CTGGCTTGAT GAATGAAGTG 005440 005441 ACTTCTAGTC CGTCAGAGGT ATGGTTCTGG GAGAGCAACA ATCATAACTA ATAGTTTTTT ACTTAACAGA CCTTTTTACA 005520 005521 ACCCGAAACT CTCTTCACAA GGGCTCTGAA AAATAACTGG ACACTAACAT GACCTGATTT GGGAAAAAAC TGAATTCTCT 005600 005601 AATTTTCCAT ATTGAAAAAT TATATTGCCT TGTTCTTTTA TTCTGCAAAA GGAAAACAGA AAAAGGCAAA AGTCACAGAA 005680 005681 TGGAAAAGGG CAAAGAATTT AAGAGGATGA ATTGAAGAAG AAAATAAAAT GCTGAGGTTG GCTTGGCTTG TTCCAGGGAG 005760 005761 AACCTGGCTG GAACAACCGG GTGTTCATCG GGAATTCAGA GGCTGTGCCG ACCCTCCAGG GAGCCAGTGC CCGACCTGTC 005840 005841 CTCCGGGTGG GGACTGAGGA TGCAGAGAAT GGCTCAATCG GCTGCACGAG AGGCCCTGCC CTGTGGGCGC TGAGCAGTAG 005920 005921 CCATGGTCCC CTGCCGGGTC GGCAGAGTTA CCTTTGCTGC TGCATCCATG AAAGACCCTT TCTCCTTGAG CTAGTCGGGG 006000 006001 AACCCACGGT GGCCAAGGAA ATGCACCACC TCCTTCTACA GACACTTTCC TCCTGGCTGC AGGGGCTTTC TGGTGAGTGT 006080 006081 TTTAGTCTCT TCCCAACTGT TTCTTTTAAC CAGATTTCAC CTGCATGAAA GCCCCCAGTA GGGTGTCAGA ATGTGGGGAG 006160 006161 AGTGGGGGGA TACTTGGCGG GATTGCCCGA GCCTCAGTCC CTAGCCTGTC ACCTCGCTGG GGAGTGTGGC AGTTCAGGGC 006240 006241 CATCATCTTC ACGGCAGCTA CGTTCTGCAG AGTATTCCAT GCTAAAGCCA GGAGCTTCTG GGGGAGGGTG GTGGGTTTCA 006320 006321 CATGGATCCT AGCATTTCCT GCCCGTGTTA CAGGCATGTG AAACACTCGG TTCTTCTCTC TTATGAAAAG AACTAGAACA 006400 006401 AATGGAGTCC GTACATGTGG CCTTCGGGCA CTGGGGTGGC TCAGAGGGGA GGAGAGGTGC TTAGAGTTGG TTTTTTGGAC 006480 006481 AAGACCCAGT GGAGCAATTC TAATTCCCTC TCTGTTGAAT GACAGCCAAC ACTCTTGTGC TGTTGATCTT CTCACCTCCG 006560 006561 TATTTGTTTA TGAATTATCT GGAAAGGTGA TTGTATGAGC TTACCGAGAC AGAGTTCCAG GGGCCCCTGG GGGAAGCCGG 006640 006641 GCAATGTCTC CACAAGCAAA GCCATGTGGG AGGGCCAGTG GGACACGCAG AGGAAAGCCC CTGTTCCTTG CCACCGAAGA 006720 006721 GAGGGTTTTC ATGCTCTGAA TTGGTACAGT GAGCTCCCTA TAAGCACTAA ACTCACCCGC TGAAACATTG GCTCTTTATT 006800 006801 TTGCGCAATT TAAG |
Predicted Small Protein
Name | NONHSAT106524_smProtein_491:757 |
Length | 89 |
Molecular weight | 9398.7829 |
Aromaticity | 0.0454545454545 |
Instability index | 96.2465909091 |
Isoelectric point | 9.85272216797 |
Runs | 13 |
Runs residual | 0.0163636363636 |
Runs probability | 0.0468251056486 |
Amino acid sequence | MPEQRLGARPALRLQSPQSLRCRRAAGMGSGVPICGSPAAPAAAALSRPQERGRPAEVCS SRDVTLQGLGRFAFVEASSEWLCEIKMF |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEL LLLEELLLLLEEEEEELLHHHHHHHHLL |
PRMN | - |
PiMo | - |