NONHSAT106545
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106545 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
4622 nt |
Genomic location |
chr6+:1739435..1746752 |
Exon number |
7 |
Exons |
1739435..1739570,1739800..1739957,1740270..1740480,1741077..1741352,1741460..1741576,1742168..1742215,1743077..1746752 |
Genome context |
|
Sequence |
000001 TCTTGGGTCA CAACATACTC ATTTCAGACC CTGGCTCTGC TACTCCCTTG CTGTGTGACC TGGGGAGAGC ACTGAACTGC 000080
000081 ACTGTGCCTC AGTTTCCTTC TCAGTGCAAT AGTGCCCCAG CCCTGGAAAT TAAACATCCA GTCCCACGCT GGCCACAGCG 000160 000161 ACAGGTCTAG GGATAACTGC AGGACCCACA AGGGCCAGCC ACAGTCCTTC CTCAGGATTT TTCTAGGTGG ATTGTTCTTA 000240 000241 AAGGTTCTAT TCCTCTTTTG ACTGTGTGAG GCTGTGTCCC CAGAAAGGCA GTCTTAAAAT GTCATGTTTG ATTCCTACAG 000320 000321 AGAACATAAA CAAAAGTGCA CATATTTTTT AAAGAATAAG ATGTTATGCT TACATCTTAT TTTTCTCATT AAACTTGTTT 000400 000401 AAGTATAATC TGTGTTATTC ACATATACAA TATAAATTTG TTAAAATATG TTAGAGAGTT ATTAAAAAAA GTAATTAATG 000480 000481 AGAGTGGCAG ATATTAATTT CTGCTGAAAA AGATCTTATT TTTGCCTTAA TTTTCTATAA TTAATGTCAT TAGTTTCCTG 000560 000561 CACAAAGTTT TCATGCAAAA CAAATTTATG TAACTCTTGG CCACGAATTG TCAATATTTT TCATAAAATT GGAAGTATAT 000640 000641 TGAGACAAAA TGTTCACAAA ATAATTGGGC AGTATCTCTT TTTCTGAGTG TTCTTATTTT TGTTTTTAAA ATTTTAATTG 000720 000721 ACACATTATA ATTGTACACA TTTATGGGGT ACATTTTGAT ATTTTGACAC ATGTATATGT TCAATAGGTA TTGTTAACCT 000800 000801 TAGACACCCT ATTGTACAAC AGAATACCAG AACTTATTTC TCCTATCTTA TTGTTACTTT GTACCCATTT ACCATTCTCT 000880 000881 CCCCAGCCTC TTTCCACCTT TTTTGAGATG GAGTCTTGCT CTTTCACCCA GGCTGGAGTG CAATGGTTTA TCCTTAACAT 000960 000961 CCCAGGTGAT TCTCATAGTG CAGGTCCTCA GACCACAACG TAGAGGAATG TGATGTGAAG CAGTGTCTAT GGCAAATAAC 001040 001041 CTTTTTATGG TATTATTTAC AAAAAGAGCA GTTCTAAAAG CACTGTTTAA TTTTTCTTCA TATCATAGAT AGTAGTCAAG 001120 001121 GAAAAAAACC ATTTAAAGAC AGGTATTTGT CCTCAAAAGT AGAACTTAAT TTTTGAACAA TAAAGTTGAG AAGGTACTAG 001200 001201 TCAAAAAACA AAGTAAGTGC GAATCATTAA TGGAAAAACA ACCACGTAAT GGAGAGTACT ACTATTATAA AAAAGCTGTC 001280 001281 TGAGAGGCAA TGAAAACATT TATCCCAGAG TTAATGGGTT CATAAGGCAG CATTTCAAGG CCAGGGGCTC AACTTCCACA 001360 001361 TCAAAATGGA TGTCTAGCAG GGCGCGGTGG CTCACGCCTG TCGTCCCAGC ACTTTGGGAG GCCGAGGCGG GTGGATCACG 001440 001441 AGGTCAGGAG ATCGAGACCA CGGGGAAACC CCGTCTCTAC TAAAAATACA AAAAAAATTA GCCGGGCGTG GTGGGGGGCG 001520 001521 CCTGTAGTCC CAGCTACTCG GGAGGCTGAG GCAGGAGAAT GGCGTGAACC CGGGAGGCGG AGCTTGCAGG GAGCCGAGAT 001600 001601 CGCGCCACTG CACTCCAGCC TGGACGACAG AACCAGACTC CATCTCAAAA AAAAAAAAAA AAAATGGATG TCTATACAGG 001680 001681 TTCACTTTCT CAGTAGGAGC CAGGAGTCTG GTGGGCAAAA ATGCCACTGC ATGTCCAAGA TACTGACTGG TGGCACCAGC 001760 001761 GCAGCCCCGC TCCCCGTGGT TAGCTTTTAC CAACAGCAGA TAGGCCTGGA GTTCCTGTAT CTCGCAATTG CACCTTAAAG 001840 001841 ATTTTTTTTT TTAATACAGA TAGGAGATGA AGATTTAAAA AAAAAAATAA GTGTAGCAGG AATCCAACAG GAATATGTCT 001920 001921 CTTCAAAAAA GGTTGAAGCA AAACAAAAAA AAATCAATCT CTATTTTTTC ATCACTTCCA CCCACTTCTC AAAATAAAAT 002000 002001 AGGTAAAAAC AGTAAGGACT TAATTATAAC ACAGCCTCCA ATGATATGTG CATTGAACTC TCGTTCCAGC AAAATTTAAA 002080 002081 CAAAACTGTT TGGTTTGCGT CTCCCTAAGT TGTTCCTTGA TAAGCCAAAA ACAAGAAGTT GCTAAAATCA ATGAGCCAGC 002160 002161 CTATTTTCTC TTAGAAAATG CCACCAAAAA AGTTTAATTT CCTTTTTATT CATTGGAATT TGTAGAAAAC TTCTAAAAAA 002240 002241 TAAAATTTAA AATAATTTCT CTTTTACCTG AAGTTATTTC CTGTGTATGT TTTTGTATTT TTGGTCTATT ACAAGATTGT 002320 002321 TTTAAATCAT ATGGAAGACA AGATTTTGGT CTATTTTATA TGCTTTGGAG ATGTGGCATG CTGGTTGGGA CAATGGTAAT 002400 002401 AGTTTCAAGT CAGTGATATT CTATAAAGTA ACTGACGGAA GAAATTATCT TGGCGAGAAG ACATATTTGT TCACATTAAT 002480 002481 GGAATACCTG CAATTTCATT TTGCCTTAAG AAATCATGGT TGGTGAACTG AGCCACAAGA CTTTTTAAAT GTTATACTAC 002560 002561 CACTACTACT ACTAATGATA AAGCATGAGC TTTTAAAAGG CATGAAATAC AAGTTGTTCA CTGTTTTGGG ATAGTCCACA 002640 002641 CAAGCAGATG GAGTCTACAA TGGCTTGGTA GCTCCCTGAA CACTGTTAAA CACTGGGGGC TGAGGAGAGC AATGAGATCT 002720 002721 GAAGTACAGC CCAGGCTCGG CACCGTTTGT CAAGAAGTTC CCCAAGGTGT CTTTCTGAAA GGGGCACCAA GGCCTGTGTG 002800 002801 CACGAGCAGA GGCCTAGTGA GCAGCTGCTC CTTGTAGGTC TGTGCCTGCA AGTGAAATTC CCGCGGCCTG GAACACCCTG 002880 002881 TCTCCTCATC TGTCTGGGAA TGCTGACCTC TCTCTAGGTC CCGGACCAGG GTCCCAAGTC TAGCCACTGG AATGAATTCC 002960 002961 AATGCACACA GTATGGTGGC TTCACCGGGA TCGGGCCTGC CCTTTGGCCC GCTTCCCAAC TAAGCTGAGC CTCCCACTTC 003040 003041 ACCCAAGTGG GCGCACGAGT GTACCCGTGG ACACACACAG AGGCACACGT GCACACACAC ACACACAGAA ACTTATTTTG 003120 003121 GCTTTTGCCA AAATACCTTC AGAATTTTTA GGAAAAATTA AATGATGCCT ATGGCTAGAA TTCCTATCTG AACGTTCTTC 003200 003201 TGCGGGATTA GATGTAAGGG GGTAAATACA CTTTAATGTG TTTGACTCAA ATTTCCATTC TAAAAATAAC ATCTCAAATA 003280 003281 GGTCTTTCAG GGCCACTCAG CTTATTTTAC TTCTTTAGAA ACAGTCCGCT GTGTTAGAGT GGTCTCAAAA AAGTCCTATT 003360 003361 TTTAGTCATG TGAAAGAAGA CAAGGACGTG CTAAAAATGT AAAAGGAGAA ACTTGACTGT TGGCTACTGG TGGGTCACTT 003440 003441 GGAGAAACAT GACTGTTGGC TACTGGTGGG TCACTTGGAG AAACTTGACT GTTGGCTACT GGTGGGTCAC TTGGAGAAAC 003520 003521 ATGACTGTTG GCTACTGGTG GGTCACTTGG AGAAACTTGA CTGTTGGCTA CTGGTGGATC ACTTGGAGAA ACTTGACTGT 003600 003601 TGGCTACTGG TGGGTCACTT TAAACACCGG CCCGGGTCCC CTGGTGCTTG TTTTGTTCCC GGCAGGAATC TAGGGATCAG 003680 003681 TCAGGGCCTC TCCTTTTACT AGAGCAAGAG CCAAGAATCT GCTCTTTTCT TCTCCATCAG ACTATCTGTG GCCTTTGACC 003760 003761 TATCAATTTC TAGGCATTTC CTCTAAAGTT CATATTGTAC CAGACTCCAG TCTGGGAATG AGAAGAGAAA GGATATACAA 003840 003841 CTCCAGATTT ATTTGTTATT ACTGAATAGT TTACTGGTTT CAACAGAGGG ATAGGGCTTT GTTTAAATTT CCACTGAGCA 003920 003921 TAATTAATGG TTATTGACTG GTAAATGAAG AACAGGTGAC ACTCTGGATT AGAAGATAAA TGATCCTGTG TTCTGGTGTG 004000 004001 ATAATGGGTT AGTAATTCAC CACAAAGCCG AGGCTGAGTG CATCCCGTCG TAATGCTAGA TCATGTCCAG GAGACAAAGG 004080 004081 CCCCTGTGTG AGAAGGACGC AGCCATCCGC CTCCTTATAC AGCTGCACAC GTTGATGTGC TCCATTGATT CCCTGATGGA 004160 004161 TGGCACAACT GAGGCAAAAG TTCACCCGTT CTCACCTTCC TGTTCACATG CTGGACCACA TGACCCATGA CATGGCCAGG 004240 004241 CCACACTCTG TGATCAAATC GCCACCCAGC TTTGGCTTCT GACTAGAGAA ACAGTGTTGA GGTTACATGT TTTAGAGGTC 004320 004321 AGTCTTCTCT CTTTGTCTCT CAAGGAATGA AGGAGGAAAA AGACAGTCTT CCTGCATTCT TTTGGTGTCC TTTGAGGATG 004400 004401 TGACTGACTT GTCCACTTCC TCAAATACTT ATTTACTTTC AGTCCTGACC TGATTACCAG TGCACATGAA AAAAATCTCC 004480 004481 TGTTTTTTAA TCCATCTCAC AGAGAGGAAA GCAAATCAGT TAAGGAATGT GCCAGGGCTT CAGATTCTTT AACATAAAAA 004560 004561 TGTCCCTTAA TTGCCAAAAA AACAGGGCAG TTTTCAAATC ATGTCTTGCA TTCATTTTGC TT |
Predicted Small Protein
Name | NONHSAT106545_smProtein_1667:1837 |
Length | 57 |
Molecular weight | 6070.0046 |
Aromaticity | 0.0892857142857 |
Instability index | 85.3180357143 |
Isoelectric point | 7.83612060547 |
Runs | 10 |
Runs residual | 0.0252732240437 |
Runs probability | 0.03705175764 |
Amino acid sequence | MSIQVHFLSRSQESGGQKCHCMSKILTGGTSAAPLPVVSFYQQQIGLEFLYLAIAP |
Secondary structure | LEEEEEEELLLLLLLLEEEEEELEELLLLLLLLLLLLEEHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |