NONHSAT106615
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106615 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1007 nt |
Genomic location |
chr6+:2227986..2233730 |
Exon number |
3 |
Exons |
2227986..2228048,2229900..2229929,2232817..2233730 |
Genome context |
|
Sequence |
000001 AGCAGCTGAA TCTCAGTGGC CATGACAGCA AGGCAACAAC GGGGCCAGCT CCCCAAGGTC CATATTTATC TTAATTCCAA 000080
000081 GGCCAGAATT CAGGTAGGaa gccacaaaaa ccaatctgca gctaattgaa tcagaaatct atgaaaggta cagtgcagac 000160 000161 tgaagaagat gactgagagg cttcataatg aggaacagca cccaaaatca cgctgcggaa cagctctcag agaacagcac 000240 000241 tgcAGTGACA GAGACGGCAC CACTGCAGCA CCAGCGCCGG TGCAGGACTG GATGCTCATG CACATCTCAG GCCTCCAGAT 000320 000321 GCCCGCGACC TTCTCCCCTT CAGCCTCTTC CATAACCACA CTACTCCTTT CCTCCATCGG CTTCTCCCCT GACTGCACAG 000400 000401 AAGCCCATTT CCCCACCATG ACGAAAAAAA ACCTTTCCCA GATCTAAGGC AAagggaaaa acatacaaga cagaatgtaa 000480 000481 atttgtgctg ccaggggctg ggaaaggagg ggatggggag tgactgatga atgggtatgg gctctccttc cggagtgatc 000560 000561 aaaaagtgtt ctggaactag agtggtaaag aaggtacgac ctcgtaaatg tactaaatgt caGTAATGAT AAATTGTATG 000640 000641 TTACATGTTA CCACCAAAAC AACAAAAACA TCTCTGGCCT CCCTCAGATT CCACGATATT ACTCAGTACT TTTGTTCTCT 000720 000721 CTCCTCTCCC CTCCCTCCCT AGCTTCCTTC TCTTCCAAGC CTGAAATGCA AACATTTTCC TCCTCCTCAC TCTCATCCTT 000800 000801 CTGTCTCCAC ATTCTCTCAT TTGGAGATAT CATCTATGAT CAGTAGCAAT TCCACTATCC ACCCTAAGGA AGAGAGCTCT 000880 000881 ACAGCAAACC TTAGAaaact ttttcagtga agggccagag agtaaacatt tcaggctttc aaagccacat ggtctctgtt 000960 000961 gcagctattt aactctatgt ggaagcagcc agaaacaata agtaaac |
Predicted Small Protein
Name | NONHSAT106615_smProtein_644:763 |
Length | 40 |
Molecular weight | 4376.1644 |
Aromaticity | 0.102564102564 |
Instability index | 90.6307692308 |
Isoelectric point | 8.36614990234 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0158856335327 |
Amino acid sequence | MLPPKQQKHLWPPSDSTILLSTFVLSPLPSLPSFLLFQA |
Secondary structure | LLLLLLLLLLLLLLLLLEEEELEELLLLLLLLHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo |