NONHSAT106616
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106616 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
717 nt |
Genomic location |
chr6+:2228225..2233509 |
Exon number |
2 |
Exons |
2228225..2228248,2232817..2233509 |
Genome context |
|
Sequence |
000001 TGGGTCTACG CAGTGAAGTA CAAGGTAGGa agccacaaaa accaatctgc agctaattga atcagaaatc tatgaaaggt 000080
000081 acagtgcaga ctgaagaaga tgactgagag gcttcataat gaggaacagc acccaaaatc acgctgcgga acagctctca 000160 000161 gagaacagca ctgcAGTGAC AGAGACGGCA CCACTGCAGC ACCAGCGCCG GTGCAGGACT GGATGCTCAT GCACATCTCA 000240 000241 GGCCTCCAGA TGCCCGCGAC CTTCTCCCCT TCAGCCTCTT CCATAACCAC ACTACTCCTT TCCTCCATCG GCTTCTCCCC 000320 000321 TGACTGCACA GAAGCCCATT TCCCCACCAT GACGAAAAAA AACCTTTCCC AGATCTAAGG CAAagggaaa aacatacaag 000400 000401 acagaatgta aatttgtgct gccaggggct gggaaaggag gggatgggga gtgactgatg aatgggtatg ggctctcctt 000480 000481 ccggagtgat caaaaagtgt tctggaacta gagtggtaaa gaaggtacga cctcgtaaat gtactaaatg tcaGTAATGA 000560 000561 TAAATTGTAT GTTACATGTT ACCACCAAAA CAACAAAAAC ATCTCTGGCC TCCCTCAGAT TCCACGATAT TACTCAGTAC 000640 000641 TTTTGTTCTC TCTCCTCTCC CCTCCCTCCC TAGCTTCCTT CTCTTCCAAG CCTGAAATGC AAACATTTTC CTCCTCC |
Predicted Small Protein
Name | NONHSAT106616_smProtein_575:694 |
Length | 40 |
Molecular weight | 4376.1644 |
Aromaticity | 0.102564102564 |
Instability index | 90.6307692308 |
Isoelectric point | 8.36614990234 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0158856335327 |
Amino acid sequence | MLPPKQQKHLWPPSDSTILLSTFVLSPLPSLPSFLLFQA |
Secondary structure | LLLLLLLLLLLLLLLLLEEEELEELLLLLLLLHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo |