NONHSAT106650
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106650 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5659 nt |
Genomic location |
chr6+:2356966..2362624 |
Exon number |
1 |
Exons |
2356966..2362624 |
Genome context |
|
Sequence |
000001 GAAATTCATT TCACGTAGTG AGAAAGCCAG AGGTAGGAGA TCCCAGGTTC CGCAGCTTGA CAACTCGTAC TTCCTCCATC 000080
000081 CTTCATGCAT TGTAGAATAG CAGCCTCCAA AGATGTCCGT GCCCACATCC CTGGAAACTG TGAAGATGAA GAATCACAGT 000160 000161 TAATTACAGG AAAGAGCCTC ATTTTTTTAA AAATTTGAGA TGGGGTCTCC CTATATTGAC CAGGCTGGTC TTGAACTCCT 000240 000241 GGCCTCAAGC GATCCTCCCA CCTCGGCCTC CCAAAGTGCT AGGATTGCAG GCGTGAGTAA TGGGGCCCGG CTGAGCCTCA 000320 000321 CTTTTTTTTT TTTTTTTTTT TGAGACAGAG TCTCGCTCTG TCACCCAGGC TGGAGTGCAG TGGTGCGATC TCAGCTCACT 000400 000401 GCAAGCTCCA TCTCCCGGGT TCACGCCATT CTCCTGCCTC AGCCTCCCGA GTAGCTGGAA CTACAGGCGC CCGCCACCAC 000480 000481 GCCCGGCTAA TTTTTTGTAT TTTTAATAGA GACGGGGTTT CACCGTGTTA GCCAGGATGG TCTCGATCTC CTGACCTCGT 000560 000561 TATCCGCCCA CCTCGTCCTC CCAAAGTGCT GGGATTACAG GCTTGAGCCA CCGCGCCTGG CTGAGCCTCA CTTTTTTATT 000640 000641 GTAAACTTTT GTCTGCATTT TTTCCAACAA ATGGATTCAT TGCTGTGTGT TACTTGTCAT GGCCCATTGT AAACAAAATG 000720 000721 CTTATATTAT GGCATATAAA CTGTTACTTG CTACTGCCTA CAAATCAGAT GAATAAGTAA CAGCACATTC ACTATGTGGA 000800 000801 GGTCAGGAAA TGATGGTTTA AGCATTTCAC ATCCTGACAT AATAGTTTAT TATGTATATG TGGACATTTC ACTGTGTTGT 000880 000881 AGTTATATAT TAGGAAATTG GTTGGGGTTA TGGTTGCCAT GCACTGTAAT ATAACTTTTT TTCAATTTAC AAACAATGAT 000960 000961 AAGAAAATTT TTAGTGGTTT TTCACAGAAT ATCTGACTTT CAGGAACAGA TTAATGATGT TAAGTGGGAA ATGTTGGGAT 001040 001041 CATCCAAATT CACCCCTGAT CCCCACCCAC CGGCATCACT CCCATTCTAG TCTAAGCCTT GACTGTCACG GTTGCCTCCT 001120 001121 AAAAGGGTCT TTCTGCTTCC ATTCCTGCCA TCCTTCCTCC AACCTCTCCT CCACAAAGCC AACAGAGAGA CTTTTAAAAA 001200 001201 AATCGTGGTA AAATTTATAT AATATAGACT TTACCATCTT CACCGCTTTT TTTTTTTTTT TTTTTTTTTG AGACAGAGTC 001280 001281 TCACTCTGCT GCCCAGGCTG GAGTGCAGTG TTGCGATCTC AGCTCACTGC AGCCTCTGCC TCCCAGGTTC AAGCGATTCT 001360 001361 TCTGCCTCAG CCTCCTGAGT AGCTGGGATT ACAGGTGTGC ACCACCATGC TCAGCTAATT TTTTGTATTT TTAGTAGAGA 001440 001441 TGGCGTTTCA CCATGTTGGC CAGGTTGGTC TCGAACTCCT GACCTCTGGT GATTTGCCCA CCTCGGCCTC CCAAAGTGCT 001520 001521 GGGATTACAG GCATGAGCCA CTGTGCCCGG CTCATCTTCA TCATTTTTAA GTGCACAGTT CAGTGACATT TCTGCACTTA 001600 001601 CAATGTTGTG CAGCTATCGC CACCATCCAT CTCCAGAACT TCTCATCTTC CCAAACCAAA ACTCTGTACC CATTAAACAC 001680 001681 CAACTCCCCA TTCTCCCTGC CCCCAGGCCC TGGACACCCC TATTCTGCTT TCTCTCTCTA TGCTTTTGAC CATTTTAGGT 001760 001761 AGCTCACAAA GTGGGATCAT ACAATATTTG TCCTTTGTGT GTGGCTATTC TCTTAGCATA ATGTTTTTGC AGTTCATCCT 001840 001841 TGTTGCGGCG TGTGTCAGAA TATCATTTCT ATTTATGGCT GAGTGGGTAT TCCAGTGTAT GCACCATATT CTGCTGATCC 001920 001921 ATTCCCCTGT TGATGAACAT TGTGCTGCTT CTGCCTTTTT TCTGTTGTGA CGAATGCTGC TATGAGCATG GATGTACAAG 002000 002001 TACGTGTTTG GGTCCCTACT TTCAATTATT TTGGGCTTAT ACACAGAAGT GGAATGCTGG ATCGTATTGT GGTGCTATGT 002080 002081 TTAACCTTTT GAGGAACTAC CAAACTGTCT TCCACAACAG CTGCAAAATT TTACATTCCT ACCAGCAATG CGTAAGGGTT 002160 002161 CCAGTTTCTC TACATCCTTG CCCACACTTG TTATTCACCC TCATTCTCAC CTATTTTGCT AAGAGCCATC CTAGTGGCTG 002240 002241 TGAGGTGATA TTTCACTGAT ATGCACTTCC CTAATGACTA ATGTTGTTGA ACGTCTTTTC ATGTGCTTAT TGGCCATGTG 002320 002321 TATATTTTCA GAGAAATGTC TATTCTAGTC TATTCCATTT TTGAATTAAA TTTTGTTTTT GTTGTTGAGT TGTAGGAGTT 002400 002401 AAATGCATGC ATTTATATTG TTTTCTTTTT GGTTTCCAAG TCATACTAAC AAATTGTACT GTTAAGTTGA AAATAAAATG 002480 002481 TGAAGATTTA GCTCACGTAC TCTTGATATT TCTTGATAGT GTTGAATACG GTGTTTATAT AGTTAATAGT TGCTTTAAAA 002560 002561 ATGCCATATA AGTCTCAGCC TTCATATTTC TAGGATTGAG AAGACAAGTG GTCATGCCAC TGATACTCAC ACCTGGTACT 002640 002641 TAAAAAATGC CATTCCCAAA GTGTTGGGAT TACAGGCATG AGCCATTGAA CATGGCAGAA TTTTTCAATA GAAGTTATGC 002720 002721 TTTTCGGTAA AAGTTGCTTT GCCGGAGAAT AACACAGTGG TTTGGGCTAT CCTGCTTCAT GGCTGCAGCT GCTCCTCAGC 002800 002801 TACCATTGAG CTCCCACCTC CCTGCTCTTA ACAGAGGAAG ACATAGGGAA AGAAAAGTAG ATAAAACCTA AATAAGCTGC 002880 002881 TTTCCCAGTT TGCTGTTGGC TGGGATGATA TCTTATTACC TGCTGCACAC CTTCATTTGT CAGTCTCCTT TGATTTGAGG 002960 002961 AGGACATTTT AGTGGGCATG TGGTGTCTCC CTGTTATGGG CTAAATTGTG TTCTCCCTAA ACTCATATGT GATCATATTT 003040 003041 GGAGACAGGG TCTTTACAGA GGTAATCAGA TTAAAATGAG GTCATTAAGG TGTTCCTTGT TCCAGTATGA CTGGTGTCCA 003120 003121 TATCAGAAGA GGAGATGAGG ACACAGACAC ACATAGAGGG AAGACCACAT GAAGACAGAG GGAGAAGATG ACCTCTACAA 003200 003201 GCCAAGGAGA GGGGCCTCAG GCCAGCACAA GAGCACAGGG CAGGCACCTC TTCCTGCTCA CTGGGGAGAG CCTGAAGTCT 003280 003281 CCAGTGTGGT CACCTCTGAT GAGCTGTGTG CTTGGAAGGA GGGCAGGGGC AAGAAGGCCC AGAACAAGGA GTGAGTGCCA 003360 003361 CTGTGTCCTC AGGGACCTGG CTTCTGCTGG GCCCAGCTGG GCAGCTCTAC TCTGTCACCA TCTCAGCTTC CCGTGGCTTG 003440 003441 GCTGCTTCCT GTGCATGAAG ACACCATCCC CACTAACCTG CCCCAAGGCA GGGCCTGTGT GTCGGTCGGA ATATCTCTGT 003520 003521 CTGTGGATGC CAGGGAAATG AATGAAGGTG CTGATACTCT GCACTCAGGC ACTTCCAGTA ACATTACTGC ATCTAAAGCT 003600 003601 GTTTGTTTCA CTTTCAGAAG GTGAATTCCA CGAGGGCCCT CTGTCGTCTG CCCTACCCCC TGCACATAGT TCCATGCCTG 003680 003681 GCATTTCAGA AGTGTTTGTT AATACTGAGT GTAGGATAGG AAAAGGTTTG TAGTATGGAT AATATAAATA ATTGGTCTAA 003760 003761 TGAGACTGAT GCTGAATTCT GCTGTGCTAC CTACTGTCCC ATCCCTCCGC AGGGCCTGTC TTGAGATGCA CCTTGTTTGC 003840 003841 CCACGGGGGA AACGTGCTTT GGAAAGTGCT GGACACCATG GCTGTGCAGG CCCAAGAAGG TGATGTATTT AGTGTGCTTC 003920 003921 AAGAAAACTA ACATTTTCAG AGGGAGCAAG TTACTTATTA TTGGTTACCC TTAATATATA CCATCTAGAT TAAGCATATT 004000 004001 TATTTCCAAA TTGTTCGCTA AGGTACAGGT CCTTGCCTTA GTCAGTCTGA GCTGCTGTAA CAAATTACCA TAGACTGAGT 004080 004081 TGTTCATTAA CAACAAAGTA TTTCTCATGG TTCTGGAGGC TGGAAGTCTG AGGTCAGGGT GCCAGCATGG TTGGGCTTCG 004160 004161 GTGAGGGCTC TCGTCTTGGT TTACAGACAG CTAGACAGCT GTCTGTATCC TCACATGGCA GAGAGAGACA AAGGTTGCAA 004240 004241 GCACTCTGCT GTCTCTTCTT ATAAGGGCAC TAATTCCATC GCAAGGGCTC CACCCTCATG ACTAATCATT TCCCAAAGGC 004320 004321 GCTGCCTCCT AAAATCACAT TGGGTGTTAG GATTTCAACA TATGAATTTG AGGGGGACTC AAACCTTCAG ACCATAACAG 004400 004401 TTCATGGCTA AGATTATAAA TGACCAAAGC CCAGTGTCAC CAATAATCCA GCTCTAGAAA GTGTAGTAAT GGAAACGACT 004480 004481 TCATCCCCAT GAGATGGAAA CAGTTAGAAG GATGAATGAC TCAAGCCTTG ACAAGGATAT GGAGAGACAG GGTGTTGCTA 004560 004561 ATGGGAGTGC AACTGGTACA GTTATTCTGG AAAACCATCC GTTTCTTTGT GAACTCAAGT GTGCATCTGT CTTCTGACCC 004640 004641 AACAGTCCCA CTCTTGAAGT TGCGCAATGT GTAGCTTTTA CAACTATAAG CGGTGGCCCT GATTCAAGAC CACAGAATGA 004720 004721 GCCACTGGAA CATCTGGGAT GAGGACCTCC TGCTTGCCAG GTAGTTGAAA GACCTATGTT CGTCATAGCA ACAGGGCCTG 004800 004801 GAAAAGAGAA GAAATACAGC CTTTGTATTT CTGGGATTGA GAAGGAAAGC AGTCATGCCA CTGAGAATCT CTGGGTCTGG 004880 004881 AAAGGGGGTT GGTCATTGTG GATTCCATGA AGGCTCTGCC GGAAGAATCT GGAAGGACTG AGTCTTCAGA GCCTCAGCCC 004960 004961 TGGGAGGCGG AGTGACAGGG ACCTATACCG ATTGAGGACA GAGAGGAAAA GGTCCCTGCT GAGCATTTCT CTTTTGAAAG 005040 005041 ACCCTCTGGC TGCAGCCTGG ATGAGCAATG CTGACAGGTG ATTCGCAGTA CTGGCTGGCA GTGTAAACCA AGTTAGCAAA 005120 005121 ATAGAAGCAG CAGCCTGGGA GAAAACAGGG CTTGGAAGAA GACTGTGGTG GAGACTTCCA GGACTCCTAG ATGATCCAGG 005200 005201 AGGACAAGAA AGTGCAAGTT TGGGATCCTG GAATTCCTGC CAATCTGCAG GTGGAGGCTT AAGCCAGTAC TGATTTAATC 005280 005281 TGAAACCTAA CGTGAATGAA ACAGCTTGCA CAGCGCAGCA AGCGGCAGGA GCAGTGTCTC CATGCCAAGC TCACCAACAT 005360 005361 GTCCATTTCC TTACTGGGTG GTGACTGTCT CAAAAGGAGG ATCCACGTTT GGTTTTACTT TGTATCACCA TGACTTGGCA 005440 005441 CAGGATCTGG TACATAGTAG TTCTCAGTAG ACGCTAGCTG AGGGGCAAAT AAGGAATGGT ACAACGTGTG TGGACACAGG 005520 005521 TTAACCTTAT GGAGGTCAGA AGAAGGCAGA GGGGAGCAAA TGGAGTCCCA GACATCAAAG GAACGTCCCC AAAGCCCTCC 005600 005601 CCACCCACCT CTCTCTTTCT CTCTAACAGT AGGGTTTACA AAGAGCAGCT TATTCCGGG |
Predicted Small Protein
Name | NONHSAT106650_smProtein_1739:1969 |
Length | 77 |
Molecular weight | 8574.2358 |
Aromaticity | 0.144736842105 |
Instability index | 55.2960526316 |
Isoelectric point | 5.97308349609 |
Runs | 7 |
Runs residual | 0.0493042952208 |
Runs probability | 0.0224594342242 |
Amino acid sequence | MLLTILGSSQSGIIQYLSFVCGYSLSIMFLQFILVAACVRISFLFMAEWVFQCMHHILLI HSPVDEHCAASAFFLL |
Secondary structure | LEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLLHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTT TToooooooooooooo |