NONHSAT106665
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106665 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5661 nt |
Genomic location |
chr6+:2403917..2409577 |
Exon number |
1 |
Exons |
2403917..2409577 |
Genome context |
|
Sequence |
000001 TTTGCTTGTG TCTTCTTGCT TATGCCTGGA TGTGAGGTCA GGTGGGGTAG GTGTGCATAA GGCCTGCCAC CTGGTGTTGG 000080
000081 TGTGTACACA GGGCTGGCAT CAGGCCACAG AGCTCCTAAG GAAGCAAGTG CAAATGGTCC CAAAGGCAGT AAATGGAACA 000160 000161 TGCGAGTAAA CCTTAACACT TTTTTTCACA TTCCTTGCCA CATCAGCAAG GCCAAAAATG GGAGAATTGC ATTTCTTTGA 000240 000241 CAAATATTTC TTTTTTATTC ATTTTCTTAT AAAATTATCC CCAACCTGTC TGAAGAGTCT GCCAGCCATT CATGTATCTA 000320 000321 TACGAGGCAG TTTTATGGGG ATGGCATAAG CAAATTCCCC ACTAAGACTT TCAGCTCTCT GTGAAAAATG AGTTGCCGCT 000400 000401 TAATGAAGCA CAGCTGAGAA CCTCCAGCTG CCTTCCAGTG ACTCCCCAAT TTTATATCTC GACACCAGAC TTCTCCTCTG 000480 000481 CAGTCCAAAG AGTGGTGTGC TGGTCAATGT TTAACAACCA ATTCTCCAAA GGGGAAGAAA TAATACACCA TGAATTGTCG 000560 000561 CATTTGCCAA TTTCCAGGTG CATATATTCT CACTGTGGCT GACATCAAGC TACTGACATG ATATGACTGA ACACAGAATT 000640 000641 GGAAGAGATG CAAACTAGTG TGAGTGGGTC TAATGCACCA TCGGATCTTT TATCTGTCCA CCTGGAGGGA AAATAAGCAC 000720 000721 CTCAAAATCA GTATGTGCAA AGCTGAACTA ATCTCTCTCT GCCCCACATT CAAATTTGTC CTCTTCTGGG GTTTTCTATC 000800 000801 TGAGTGAATG GCACCACAAT GAAACTGGTT TTGCAAGCCA GGCCCCAGAC ATCAGTTGTA GTCCTCACCA CCATACCCAA 000880 000881 ACCATCACTA AGGCCTATTG ATTTTACTTC CTAACTATCC ACAATCTGCC CACTTCCCCC TACACTATGC TCTCATTCTT 000960 000961 CATCACCTGG ATTATTGCAA AAGGCTCCTG GGTGATTTCC CTGTGTCCAT TATTACACAC ACATGCACCC AACCCGTTTT 001040 001041 CCTTATTAGC CAGAGTGATC TTTGAAGAAT GCAAATATGA TAACGCCACT ACCTTGCTCG TTAAACCCTT GAATAGCTTC 001120 001121 CCATAGGTCT TAGGATGATA GTCAAAATCC TCAGAATAAC CTGAAAAACG TGAATAATGC CTCTGCCACT TTAACCTAAT 001200 001201 CCTGGGCTGT TCTGTACACA CACCCCTTGC TCCTCTGTCC TGCAACACTG GCTGTTTTTC TGTTCTTTAG ACATGCCAAG 001280 001281 CCCTCTACCA TTCAGGCTTT TCCACAAATT TTTCTCTTTG TTCGAGATGG AGTCTCACTC TGTTGCCCAG GCCGGGGTGC 001360 001361 AGTGGCGTGA TCTCGGCTCA CTGCAACCTC TGCTTCCTGG GTTCAAGCGA TTCTCCTGCC TCAGCCTCCC GAGTAGCTGG 001440 001441 GATTACAGGT GCCCACGACC ATGCCTGGCT AATTTTTGTA TTTTTAGTAA AAACGGGGTT GCACTATGTT GGCCAGCCTA 001520 001521 GTCTTGAACG CCTGACCTCG GGTGATCCAC CCACCTCGGC CTCCCAAACT GCTGGGATTA CAGGCTTGAG ACCCCACGCC 001600 001601 CAACTGTCCA CAAATTTTTC TATGCTGGAA AAGCTTGATC TAATGAACTC CTTCTTATTC TTCAATCTCA GCTAAAATTT 001680 001681 TCTTAGAAAG GCGATCCCAA TGGAAGCGAT CACTCTATTC TTATCTTCCA TAACAACCTG TTCTTGGCTT CCACTGCCAA 001760 001761 CAGCAGTGTA TGGAAGTCCC AGTTGCTTCA CGTCCCAACC AACATTTGGT TTATCAAACT TCAGAGTTTC TGACATCCTA 001840 001841 ATGTAATGGT ATCTTATTAT GATTTTCGTT TGCATCTCTT GGATTACTAA TAAATTTGAG CATCTAAAAA TAAGTTTATC 001920 001921 GGCCATTTGA ATTTCCTTTT GCATGAAATG CCTGTTTGAG TTGGTTGCCA TTTTTCTGTT GAGTTGTCAT ATTCTTATTC 002000 002001 ATTATTAGAA AGATCCCTTG TATTAGTCCG TTTTCACACT GCTGATAAAG AAATACCTGA GACTGGCCAG TTTACAAGGG 002080 002081 AAAGAGGTTT AATGGAGAAC TCACAGTTCC ACATGCCTGG GGGAGCCTCA CAATCTTGGC AGAAGGTGAA TGGCACAGCT 002160 002161 CACATGGTGG CAGACAAGAG AAGAGGGCTT GTGCAGGAAA ACTCCCCTTT ATGATAACCA TCAGATCTCA TGAGACTTAC 002240 002241 TCACTATCAC AAGAACAGCA CGGGAAAGAC CTGCCCCCCA TGATTCAATT ACCTTTCACT GAGTCCCTCC CACACATGTG 002320 002321 GGAATTCAAG ACAAGATTTG GGTGGGACAC AGCCAAACCA TATCATCCCT GTACATATCA TTGATATTAG ACTTTGTGGG 002400 002401 TTATATGTAT TACAAGTATC TTCTTTCACT CTTTGCCTTG TTTTCTTATT TTCTCCAGTA TGTTTTTTGG TGAAAGTATG 002480 002481 TTTTTAATTT TAGGATTGCC AAATACCTTA CAAGCAGAAA TTACAAGAAT TTCTGCTTAT AAGAGTCCGT TGGGGGAAGC 002560 002561 TCTCTCAGGT TTTGTTTGTC TGAAAAGGTT ATTATTTATT CTTCGTTCTT GAAAAAATAA TTTGACTCGG TATGGAGTTC 002640 002641 CAGGATGACA GTAACTGAAA AAATTTCGCA AACTGAAAAA AAAATTCTAC TCTCTTTTGG CTTTGATTAT TGTTGATAAG 002720 002721 AAATAACCTT TAATGTAACT CCTTCCCTTT GAAGGTTGTT GTCTTTTCTC TCTGGCTTGC ATTGAAAACC TGCTTGTCTT 002800 002801 TGATGTTCTT TGGTTGTTGT TGTTGTTTTT AATAATGCAT CTACCTTTGG ATTTATTTTA TTTAACCCAC AGGGAATTTA 002880 002881 TTGGGCTTCC TGGCTCTGAC AGTTTGAGTC TTTCAACAAA TCTGGAAATC TCTCAGTCAT TATTTTATTG AATATCACCT 002960 002961 CTTCTTCATT CTCTCTCATG TCTTCTACTG AACTCTAAAC ATATATTACA TCTTCTTATT CTCTCTTCCA TCTCTTTGTT 003040 003041 TCTCTGGGCT GCATTTTGGA TTTCTTCATG CCTATTTTCT AGTTTAGTAA TTGTTTCTTT GGTTGTGCTT AATCTGCTGT 003120 003121 TTAACACGTC TAATAAACTT TTAAATCTGA ATATTATAAT TTTCATTTCT AGAAGTTCTA CTTTACAAAT TTGGTTCTCC 003200 003201 TTACAAATGT GCTCATTTAT TTTCAAAACT CTAAAGGAAA TAAAAATATT TATTAAAATA CTTGGCCAGG CACAGTGGCT 003280 003281 CACATCTGTA ATCCCAGAAC TTTGGAAGGC CAAGGCAGGA GGACAGCTTG AGGTCAGGAG TTTGAGATAA GCCTGGGTAA 003360 003361 TGTAGTGAGA CCCCCAACTC TACTATATAT ATATATGCCA GGCATGGCGG GTGTGCACCT GTAGTCCTAG TCTCGGGAGA 003440 003441 CTAAGGTGGG AGGATTGCTA GAGCCTGGGA GCTTGAGACT GCAGTGAGCT GGAATTGTGC CATTGCATTC CAGCCTGAGT 003520 003521 GACAGCGATA CCCTGTCTTC AAAAATAAAT AAAATACTTA TTTTATATTC TATTTGATAG GTTCCATATC GAAAATCTTG 003600 003601 GTCTCTCTGA CATCTAATCT AACTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTGACA 003680 003681 CAGAGATGTG CCACCTATAT TCCACATCAA GGAAAGAGTT GACGCCCAGA TGTCTATGCC CAGCTGTGGG GAGAAATGAG 003760 003761 CTCAGCAGGC AGCCTCCATC TGCAGGGAGC TGCCTTGCCT ACGGCCATGC CCTATTCAAA ATAGCCTGCA TCTGAGGACA 003840 003841 GAGTGAGGGT ATCAAGACCT GGCCATTTTG TGAGGGTATC AAGACCTGGC ACCTCTCATG GATGATATTT TCACACACTG 003920 003921 GGTTGAACAA GGGTTTGTTA GAGCTACATT ACAGTTCAAC TTCTCCTTCT CCTCCCTTTC ACAGTTGCTG ACCCTAATAA 004000 004001 ACACTGTATT CCAAGGTCTG ACCCTGTGGC TGCTTCCAAA GCACCCAATC TGCAACATGT GTGGGTGTGT CTGCATGTTC 004080 004081 TGCTGCTACT TGCTCATGTT CCTGGCTCTT GTTCCTTGTT TCCTTCTGTA TTTCTGTTTC TTGAGACTTT ATCTGTTGAA 004160 004161 ATTCTTTGAG ATTGAGTTGA GGTTGGGTTC CTTTTGAGAG TACAGATGGT CCCTGACTTA TGATGGTTTG ACTTCACAAT 004240 004241 TTTTTGACTT TACTATGGTG CAAAAGTGAT ATGCATTCAC GGAAAACTGC ATGATCCTCT TTTGAGATGC TAGGCAGTCA 004320 004321 GCCAGGGGAT CATGATCGTA AGGGCAAACA ACTGATAAGT GACAGTGAGC TGTGTTGTCT GTTGCCCAGC TGCAGGCTAA 004400 004401 TGTAAATTCT GAGCACAACG AAGGTGACTA GGCCAAGCTC TGATGTTTGG TAGGCTAGTC ATATTAAATG CATTTTAGAC 004480 004481 CTATGATATT TTCAACTTAC AATGAGTTTA TCAGGAGGTA ACCTCATGGT AAGTCGAGGA GCACCTGTAT ATGACATTTC 004560 004561 TTCTAGAAGT CACCTGGGGC ATGACCAGCT TGAGACCAAT TTGTCTGTTT TTTCAAAACA CAGACATAGT GTGTATTGGC 004640 004641 TGAAAACCCA TATGAGTGGG GATTGTAGTT AAGACTTCTC AAGATAGGCA TGTTCTTTCT TTCCCCTTCT TTGCTAGTCT 004720 004721 GTTTCCTACT TACCCTTATA CTAAGGCTAT AGATGTTCTA GGCTTCACTT GGTGGGGCAG TCTCTCCACC TTGGGTGGGC 004800 004801 TTAATTTTCT GTTTCTCATG CCCCTGTAGC TCTCAAATGG AAACGAAAGG TCATCAGAGT TCAGTACTTA GTTTTGGGTG 004880 004881 GAGGCTGCTT TGGATCTTCC TTACTTTCCG TAGTTCCCAG GCTCAGTATC TTACTTTGAA ACTGGAAACT CCTGCTTCCA 004960 004961 AGTTTCAGAG TAAGATAGAT GCCTCACTTT ATTGCTGGCA TGTTGATTCA CTAAAATGTT ATTTTCTTTT GTTTCATATT 005040 005041 TATCCAGTTT CATTTATTTT CCTTTTCTGA AATTGGGGCT GGGTCATTTA GGGTTTCTAG TCCACCAGAC TTGGAAATAA 005120 005121 ATGTCTGGAG TCACGTTTAA GTGGACTTTA CCTAAAAGGG CCACCTGGAG AGCCAGAGAC CCGACCGGGG AGAGAGTTTG 005200 005201 TGTTGATTGG ACCATCAGAA ACAGAGTTAA TAGGGAGTTG TAAGTGGCTA AACATGGGAA GCAGGGAGCT TTTTGAGAGA 005280 005281 TCCACAGTTA TGCAGAACGT CTCTTAAATG TACTCCAGGA AAAATAGTCA GTTTTGGGGG TCCCCAAGAC AAGGGAGCAC 005360 005361 TATTAGAAGG TGGAGGCACT GTCTGCCAAA TCAGAGCTTC CCTGGCCTTG GCTTTCTCCC AGGAGGAGCC AGAGGAGGAT 005440 005441 TTGTGAGGAG GGGACAGTAC AGAAGCATGA AGCTTAGAAA GACAAGAGAC CCCTGCCCAC TCCAAGGCCT CCAAGGCAAA 005520 005521 GCCGAGAGTG GGGAGAAGCT TTAAGTAAAG TTCAGAATTT TGATTAAGAC AGAGGAACAA GTACACCAAT GGCAAAAAGA 005600 005601 AGACCACTCT TGTATATTCT TACAACTATG GTTGTACCCA ATCTCCCTTC CAGAGGAGGG C |
Predicted Small Protein
Name | NONHSAT106665_smProtein_2210:2383 |
Length | 58 |
Molecular weight | 6846.7177 |
Aromaticity | 0.140350877193 |
Instability index | 50.4807017544 |
Isoelectric point | 6.48382568359 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0366837425661 |
Amino acid sequence | MITIRSHETYSLSQEQHGKDLPPMIQLPFTESLPHMWEFKTRFGWDTAKPYHPCTYH |
Secondary structure | LEEEEELLEEELLHHHLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |