NONHSAT106666
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106666 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1980 nt |
Genomic location |
chr6+:2403917..2409577 |
Exon number |
3 |
Exons |
2403917..2404226,2405411..2406611,2409109..2409577 |
Genome context |
|
Sequence |
000001 TTTGCTTGTG TCTTCTTGCT TATGCCTGGA TGTGAGGTCA GGTGGGGTAG GTGTGCATAA GGCCTGCCAC CTGGTGTTGG 000080
000081 TGTGTACACA GGGCTGGCAT CAGGCCACAG AGCTCCTAAG GAAGCAAGTG CAAATGGTCC CAAAGGCAGT AAATGGAACA 000160 000161 TGCGAGTAAA CCTTAACACT TTTTTTCACA TTCCTTGCCA CATCAGCAAG GCCAAAAATG GGAGAATTGC ATTTCTTTGA 000240 000241 CAAATATTTC TTTTTTATTC ATTTTCTTAT AAAATTATCC CCAACCTGTC TGAAGAGTCT GCCAGCCATT GGGGTTGCAC 000320 000321 TATGTTGGCC AGCCTAGTCT TGAACGCCTG ACCTCGGGTG ATCCACCCAC CTCGGCCTCC CAAACTGCTG GGATTACAGG 000400 000401 CTTGAGACCC CACGCCCAAC TGTCCACAAA TTTTTCTATG CTGGAAAAGC TTGATCTAAT GAACTCCTTC TTATTCTTCA 000480 000481 ATCTCAGCTA AAATTTTCTT AGAAAGGCGA TCCCAATGGA AGCGATCACT CTATTCTTAT CTTCCATAAC AACCTGTTCT 000560 000561 TGGCTTCCAC TGCCAACAGC AGTGTATGGA AGTCCCAGTT GCTTCACGTC CCAACCAACA TTTGGTTTAT CAAACTTCAG 000640 000641 AGTTTCTGAC ATCCTAATGT AATGGTATCT TATTATGATT TTCGTTTGCA TCTCTTGGAT TACTAATAAA TTTGAGCATC 000720 000721 TAAAAATAAG TTTATCGGCC ATTTGAATTT CCTTTTGCAT GAAATGCCTG TTTGAGTTGG TTGCCATTTT TCTGTTGAGT 000800 000801 TGTCATATTC TTATTCATTA TTAGAAAGAT CCCTTGTATT AGTCCGTTTT CACACTGCTG ATAAAGAAAT ACCTGAGACT 000880 000881 GGCCAGTTTA CAAGGGAAAG AGGTTTAATG GAGAACTCAC AGTTCCACAT GCCTGGGGGA GCCTCACAAT CTTGGCAGAA 000960 000961 GGTGAATGGC ACAGCTCACA TGGTGGCAGA CAAGAGAAGA GGGCTTGTGC AGGAAAACTC CCCTTTATGA TAACCATCAG 001040 001041 ATCTCATGAG ACTTACTCAC TATCACAAGA ACAGCACGGG AAAGACCTGC CCCCCATGAT TCAATTACCT TTCACTGAGT 001120 001121 CCCTCCCACA CATGTGGGAA TTCAAGACAA GATTTGGGTG GGACACAGCC AAACCATATC ATCCCTGTAC ATATCATTGA 001200 001201 TATTAGACTT TGTGGGTTAT ATGTATTACA AGTATCTTCT TTCACTCTTT GCCTTGTTTT CTTATTTTCT CCAGTATGTT 001280 001281 TTTTGGTGAA AGTATGTTTT TAATTTTAGG ATTGCCAAAT ACCTTACAAG CAGAAATTAC AAGAATTTCT GCTTATAAGA 001360 001361 GTCCGTTGGG GGAAGCTCTC TCAGGTTTTG TTTGTCTGAA AAGGTTATTA TTTATTCTTC GTTCTTGAAA AAATAATTTG 001440 001441 ACTCGGTATG GAGTTCCAGG ATGACAGTAA CTGAAAAAAT TTCGCAAACT GAAAAAAAAA TTCTACTCTC TAGAGTTTGT 001520 001521 GTTGATTGGA CCATCAGAAA CAGAGTTAAT AGGGAGTTGT AAGTGGCTAA ACATGGGAAG CAGGGAGCTT TTTGAGAGAT 001600 001601 CCACAGTTAT GCAGAACGTC TCTTAAATGT ACTCCAGGAA AAATAGTCAG TTTTGGGGGT CCCCAAGACA AGGGAGCACT 001680 001681 ATTAGAAGGT GGAGGCACTG TCTGCCAAAT CAGAGCTTCC CTGGCCTTGG CTTTCTCCCA GGAGGAGCCA GAGGAGGATT 001760 001761 TGTGAGGAGG GGACAGTACA GAAGCATGAA GCTTAGAAAG ACAAGAGACC CCTGCCCACT CCAAGGCCTC CAAGGCAAAG 001840 001841 CCGAGAGTGG GGAGAAGCTT TAAGTAAAGT TCAGAATTTT GATTAAGACA GAGGAACAAG TACACCAATG GCAAAAAGAA 001920 001921 GACCACTCTT GTATATTCTT ACAACTATGG TTGTACCCAA TCTCCCTTCC AGAGGAGGGC |
Predicted Small Protein
Name | NONHSAT106666_smProtein_515:661 |
Length | 49 |
Molecular weight | 5232.0317 |
Aromaticity | 0.125 |
Instability index | 52.4958333333 |
Isoelectric point | 4.36907958984 |
Runs | 8 |
Runs residual | 0.00109649122807 |
Runs probability | 0.0291467938527 |
Amino acid sequence | MEAITLFLSSITTCSWLPLPTAVYGSPSCFTSQPTFGLSNFRVSDILM |
Secondary structure | LEEEEEHHHLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLEEEEEEL |
PRMN | - |
PiMo | - |