NONHSAT106800
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106800 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1272 nt |
Genomic location |
chr6-:2854891..2876744 |
Exon number |
2 |
Exons |
2854891..2855924,2876527..2876744 |
Genome context |
|
Sequence |
000001 GAGAGTTCTG GCGAGGGCTG CGGGAAGGAA AGGGGGCGGC GTCCTTCACA GGGAGGGTGC AGCTGACCTC TCTCCCCTTG 000080
000081 TGCAGACTGG AAAAGAATGG CCCAGATCCT CTGGACTCCT CAGATGAGCG GATTCAGAGA GAAGCTTTTG AGAGCGTGCT 000160 000161 GGCAGAGACA TTTTTCACAG AAGAGCCCTT GCGGTGCTGG TGTCCGTGGC GTGCCTGGGT GGAAAATGAG CTTATATATG 000240 000241 AAGAAGTCAG CGAGTGGACA AAGCCAGGCG CAATGGATAG CAAAGATGTG GAAGTCTCCT CGATTCAAGT TAGAAGAAAA 000320 000321 CCGCAGCATG GAGTCTGCTC TCAGCTGTTG GGGAATTACC GATGCCTTTG ACTAAGTCAA GACTGACTTT TCCAGAATAT 000400 000401 CACCCAAGAG ATAGAGCCGT CCCTGTCCAA GTTTGTGCGC TAGCCCTTCA TGGAGGTCAG AGAGGAAGAA ACAAAGGCAG 000480 000481 CTGTGGCCTC GGCGGTCACA GTGTCAGAAC GCACAAGCCC CATAAAGAGG TTTCACGCAG GCCACCCATC CCTTTTCATT 000560 000561 CTCCAGCAGA ACAGGACAGA GAGCGTTCTG TTCTGCGGAA GGTCTTCCAC TCTACAAGGC AATCCCTCCA GCTGCTTTGC 000640 000641 TGTATTGTGC TGTCTCCTGT CACACTATGA ATGCAGTGAC CTCAGCCAGC AACAGGGAGA ACCCCCCTGC CTCCCGAACA 000720 000721 AAGGACCTCA CGTGAAATCC TGAGCTCAGA GCTTACAGAT ATGTGTGCGC TTTCACTTTA CATCGGCCGT GACTTCCAAA 000800 000801 CAACTTCAGG AAACTTTAGG ATCTCTGAGG TATACTGGAG ATGACAGCAG CGTAGAATGT TCATTTGGAT TTAGAACAGA 000880 000881 AATGCTTATT TTATATTTGG CTGCTCCCAA ACTGTCCCCA GACTTCCTCT CCAGTGGTTA CCCTCCACTG CCCTGGATGT 000960 000961 CCCACGTTTA CACTCCACAC TCACACCTCC ACCTTAACAA AGTCCTCCAC TGGGTCAAAC CATACATCGC TTCGTCTCTG 001040 001041 TAGTGATGAC TTCCTGTCCT CTGCTCTGTG GATAAAGACC CCAGATAAAG ATGCCTGTGT TGCTCAACTC TTGTAAATAC 001120 001121 TCTTGAGACA TTTTGAAAGC AGAAGGAAAG GAGACAGACG GGGAAAATAA AAGGGATGGT CTGCTTGTGC GGAAACGTTT 001200 001201 TGAGAATGCC CTTCCCTAAG AGAGAACAGT AAAAGTGAGC AATACTTCCT GAAAAAAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT106800_smProtein_449:742 |
Length | 98 |
Molecular weight | 10588.8997 |
Aromaticity | 0.0515463917526 |
Instability index | 77.6536082474 |
Isoelectric point | 6.87908935547 |
Runs | 15 |
Runs residual | 0.0231004200076 |
Runs probability | 0.0473650120709 |
Amino acid sequence | MEVREEETKAAVASAVTVSERTSPIKRFHAGHPSLFILQQNRTESVLFCGRSSTLQGNPS SCFAVLCCLLSHYECSDLSQQQGEPPCLPNKGPHVKS |
Secondary structure | LLLLHHHHHHHHHHLEEELLLLLLLLLEELLLLLEEEEEELLEEEEEEEELLLLLLLLLH HHHHHHHHHLLLEELLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |