NONHSAT106883
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106883 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2539 nt |
Genomic location |
chr6+:2940611..2943240 |
Exon number |
2 |
Exons |
2940611..2940710,2940802..2943240 |
Genome context |
|
Sequence |
000001 TGGTAACCCG TTGGGGTTTT CTGTGCTGTG ATAAGGTTTG TTCGTTTGCA TTTGGCGTCT GCGTTGCCTT TATGAGCTGT 000080
000081 AGCGCTCACT GCGAAAATTG GTGAGACGAC TCTGTGAAAG TTGCAACTTC ATTTCTGAAG TGGGTGAGAC GACGAGCCCA 000160 000161 TTAGGAGGAA CGGAACACTC ACTGCGAAAG TTGCAATTTC ATTTCTATAG TGGGTGAGAC GACGAGCCCA GTGAGAGTGA 000240 000241 ACGAACAACT CCAGGCGCGC CGCCTTAAGA GCTATAGTAT TCACTGAGGG TTTGCGGTTT TATTCTTGAA GTCAGTGAAA 000320 000321 CCAAAAACCA ATTTCTGGGT GTAAAAAGAC CAAGGTTCTT GCAAGGTTGC TCCTCCCAAA TTCCTTCAGA TAGGGGAAGA 000400 000401 CACACAGTTT ACAAGAACAT TTTGAATCTT ACTCATTTTC AAGTATATAA TATATATTTT TAATTGTAGC CAACATGACT 000480 000481 TACAATAAGT AAACTTAAAA AGATATAAGC CACCCATGTT GGGTGTGGGG GTACATGCCA GTAATCCCAG CTGCGTGGGA 000560 000561 GGCTGAGGTG GGGTAGATTG CTGGAGTCCA GGAATTTGAG GCCAGCCTGG GCAACATAAC ACCCCATTTC TGAAAGTAAA 000640 000641 CAAAGCCCTA ATTATGTTCA TTTTCCCCCT TCATTTTCAG ATTTCCCATT TTGGCCACGC TTCACATGCG ACACATATAG 000720 000721 AAGTACACAG CAGCTTCCCC CCTTACCTGC AAGGGATATG TTCAGAGATC TCCAGTGGAT GCCTGAAACT ATGGATAGTA 000800 000801 CTGAATCCTA TATATACTGT TTTTTTCTAT ACATATAATA AAGTTTATAA ATTAGGTACA GTAAGAGATT AAAAACTCAA 000880 000881 AATATGAGTT AAACTCATAT GCAATATAAT ATATGCAATA AAATTGAAAT ACTGTCAAAC TCTGTAAAGT ATTTGAAGAG 000960 000961 ATTTGTTCTG AGCCAAATGT GAGTGACCGT GGCCTCTGAC ACAGCCCCTG GAGATCCTGA GAACACGTGC CCAAGGTGGT 001040 001041 GGTGGTCAGG GGGGAGCTTC TGGGTCGCAG GTGGATTCCA AGATTTTCTG GTTGAAAGTT CATCTAAAGA CCTGAAATCA 001120 001121 ATAGAAGGGA GTGTGTGGGT TAAGATAAGG TGTTGTGGAG ACCAAGGGTC TTATTCTGCA GATGAAGCGA GCAGGCTTCA 001200 001201 GAGAGCATCT ATTGTAAATG TCTCTTTTCA GACTCTCCTG GATCAGGAGA AAGACCCGGA AAGGGAAGGA GATTATCTAC 001280 001281 AAAAATGTAG ATTTTCCCCA CAAGAGGCAG CTTTGCAGGG CCATTTCAAA ATATGTCAAA GAAATATGTT TTGGGGTAAA 001360 001361 ATACTTCAAT TTCTTTCAGG GCCCGTTGTC TGTCATGTTG GTAGCTAATT GCTAGATAGA GTCTGTTTTG TCAGCGTTAA 001440 001441 GGTCTGTTTT AATGTAATGC TGGTCAGCTG TGCCTGAATT CCAACGGGAG GAAGGTAGAA TGAGGCATGT CTGAGCCCCT 001520 001521 CCTCCCTATT TCACATCGTG GCCTGAACTA GTGTTTCAGG TTTACTTTCG AATGCCTTTG GCTGAGAGGA GGGGTCCATT 001600 001601 TGGTTGGGGG GCTTAGAATT TTATTTTTGG GCCAGGCTTG GTGGTTCATG CCTATAATCC CAGCGCTTTG GGACGCTGAG 001680 001681 GCGGGCGGAT CACCTGAGGT CGGGAGTTCG AGACCAGCCT GACCAACACA GAGAAACCCT GTCTCTACTA AAAATACAAA 001760 001761 ATTATCTGGG CGTGGTGGCG CATGCCTGTA ATCCCAGCTA CTCGGAAGGC TGAGGCAGGA GAATCGCTTG AACCCAGGAG 001840 001841 GCGGAGATTG CGGTGAGCCG AGATCGCGCC GTTGCACTGC AGCCTGGGCA ATAAGAGTTA AGCTCCATCT CAAAAAAAAA 001920 001921 AAAAAAAAGT ATTTTATTTT TGGTTTACAA TAACATACTG TAATAAAAGT TACGTAAATA TAGGCCAGGC GCGGTGGCTC 002000 002001 ACGCCTGTAA TCCTAGCACT TTGGGAGGCT GAGGCCGGCA GATCACTTGA GGTCAGGAGT TTGAGACCAG CCTGGTCAAC 002080 002081 ATGGTAAAAC CCCATCTCTA CTAAAAATAC AAAAATTAGC CGGGCGTGGT GGTGCACCCC TGTAATCCTA ACTACTCAGG 002160 002161 AGGCTGAGGC AGGAGAATCT CTTGAACCAG GGAGGTGGAA GTTGCAGTGA GCCAAGATCA CGCTGCACTG CAGCCTGGGG 002240 002241 GACAAGAGCG AAACTCCGTC TCAAAAAAAG TTATGTAAAT ATGATCTCTC TCTCTCCCTC TCTCTCTCTC ACACCCACAG 002320 002321 TGCTGTACTC ACCTATTTTT GGACCATGGG TAACTGAAAC ACTGGAAAAT GAAACCTTCA ATAACTGGTA ACTACTGTGT 002400 002401 AGGTGCCATG TAGGGTTTGT GGACTCCTAA TGAGGAAAAA GGAGTGAGGC TGGCAGGACC AGGGGAAAGC AAAGAGAGAA 002480 002481 AGCAGATAAG CTATAGGTTC GCTTTTCTTT ATGGCCCAAG ACATATGGCC CACCTGTGC |
Predicted Small Protein
Name | NONHSAT106883_smProtein_653:871 |
Length | 73 |
Molecular weight | 8348.5893 |
Aromaticity | 0.180555555556 |
Instability index | 44.1598611111 |
Isoelectric point | 7.86956787109 |
Runs | 19 |
Runs residual | 0.12297242498 |
Runs probability | 0.0299556522467 |
Amino acid sequence | MFIFPLHFQISHFGHASHATHIEVHSSFPPYLQGICSEISSGCLKLWIVLNPIYTVFFYT YNKVYKLGTVRD |
Secondary structure | LEEEEEEEEEELLLLLLLLEEEEEELLLLHHHLEELLEELLLLEEEEEEELLLEEEEEEE ELEEEEELEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii iiiiiiiiiiii |