NONHSAT106911
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106911 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4060 nt |
Genomic location |
chr6+:2993299..3018206 |
Exon number |
29 |
Exons |
2993299..2993413,2993805..2993964,2994514..2994637,2996232..2996312,2996463..2996525,2997259..2997380,2997494..2997654,2997901..2997936,2998592..2998674,3000742..3000787,3006656..3006794,3006922..3006984,3011524..3011652,3011907..3011979,3012125..3012234,3012456..3012536,3012784..3012871,3013145..3013334,3013449..3013575,3014049..3014198,3014547..3014621,3014831..3014974,3015177..3015314,3015471..3015544,3015779..3016527,3016774..3016914,3017423..3017518,3017625..3017714,3017795..3018206 |
Genome context |
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Sequence |
000001 ACATCTTGTC TATCAATAAC ATGTTTAACT ATATATTATA TCAATATGCT CAAGAAATCA GGCCTTGGTA AAGATTTTTC 000080
000081 TTTTTTTTTT TTTTTTTTGG GACGGAGTCT CGCTCGATAA ATATAAATAA TAAGTCATAT TAAGACAAAA TTTATTTAAC 000160 000161 TGATAAAAGT AAAATTTGTT ATTCTCTCTA GCTGTATAGA TAAGACAGGA TCTCTATAGT GCATTATTTC AAGACTTACT 000240 000241 TAGTAGGAAA ACCAGTAGGT TTGATTTTTT TTTAACTCCT TCACCTTCCT CCATGAGTAG AGGCAGCCTG AGGCCCTCAC 000320 000321 CAGATGCAGA TGCCCAACCT TGAACTTTCC AACCATTCAG AGTCATTAGC CAAATAAACC TTTTATCTTT ATAAATTACC 000400 000401 TGATAACATC CAGAATATGT AAAGAACACC TACAACTCGG CCGGGTGCGG TGGCTCACGC CTGTAATCCC AGCACTTTGG 000480 000481 AATCACTTGA ACCCAGGAGG CGGAGGTTGC GGTGAGCCGA GATCTCGCCA TTGCACTCCA GCCTCAGCCT CCCGAGTAGC 000560 000561 TGGGACTACA GGTGCACACC ACCATGCCCA GCTAATTTTT GTGTTTTTAG TAGAGATGGG GTTTCCCCAC GTTGGCCAGG 000640 000641 CGGTATACAC ATTTTTCTAT TATTCTTATA TGAAATACAT GCAATAGACA AATTCATGGA GACAGAAAGT AGATTAGAGG 000720 000721 CTACCAGGAG TGGAAGGAGG GGAGAATGGG GATTTATTAT CCAATGAGTG CAGTGTTTCT ATTTGTTTTT GTTTTTGTTT 000800 000801 GAGACAGGGT CTCGCTCTGT CATCCAGTTT CTATTTGGGA TGATGAAAAC GTTTTGAAAA TAAGGCCAGT CCAGCTCCCA 000880 000881 ACCCCAAGCA GGGAGCAACT TGCTCAGTCC ACGTTGTGAT AGCTCCTCGC TGCCACAAGG TGGTGTAACC TATAATCTCT 000960 000961 CTGGGAAAAA AAAAAATCAG CTTTTTTTTT TCACCTATGC CTCTCCCCAC CCCCTCTGGG TTCGTTTTGT CTTCCAGATT 001040 001041 GCTGGACTCG CTGAAGAGAG ACTACGCAGG AAAGCCCCAG CCACCCATCA AATCAGAGAG AAGGAATCCA CCTTCTTACG 001120 001121 CTATGGCAGG GACTCTTAAT CAGAAATTGG ATACATTGTT GTAAAAAATC CAAGCCACGT GGAAGTGTAT AAAATCTTGG 001200 001201 AACTAGAAAT ACATTTGCTG AAAAATTCAT TAGAGGCTCT CAACAGCAGA ATGGATGAAG CAGAAGAAAA AATCAGTGAA 001280 001281 CTCAAAGGCA GGTGATTTGA AAATACACAG AGGAGAAAAA AGAACAAAAA GAGGATCCTA AAAGCAAATA ACATGTAACA 001360 001361 GAGCTCCAGT TCATCTGGCA ACAGACTTCT CAACATGCAC CACCACCAGA CCCACCTTAC AAGAAATGCT AAAGGGAATT 001440 001441 CAATAAGAAA GAAAAACACT AATGTGCAAA AAGAAAACAT TTGAAGATGT AAAACCCACT GGTAAGCATT GAACAAGACA 001520 001521 TCCAGCCTCT CTTGGGTGTC AGTTTGCTCT CTGGTAAATT GGGAAATACA CCAGTCTCAC CAGTTGTTTC TAATCCTGAG 001600 001601 GTTTTCAATT ATGGAGTGGA AACCCACGAA GCCTACAAGC AAAGGTCTCT GGCTAGCGAC ATCACTGATG AGCACACTAC 001680 001681 TTTAAACACT GTACGTAGAT GTAACACTAC TTTTTTTTTT TTTTTTTTTT TTTTTTTGAG ACGGAGTCTC GCTCTGTCGC 001760 001761 CCAGGCTGGA GTGCAGTGGC GGGATCTCGG CTCACTGCAA GCTCCGCCTC CCGGGTTCAC GCCATTCTCC CGCCTCAGCC 001840 001841 TCCCGAGTAG CTGGGACTAC AGGCAAAGTG CTGGGATTAC AGGCGTGAGC CACCGCGCCC GGCCGATGTA ACACTACTTT 001920 001921 AAACACTTTA CCTAATTGGG TAAAGATATC CACGTAGCCA ATATCACTCA CTCCAAATCC CGACTGCCAT GTAGAAGGAA 002000 002001 AGGGGAATCT ATTATAAGGG CTCTGGTCAC TTGGGCCTCC TGGATCCCAA GGACAGAGCT GTAGCTGCTC TCGTCCACAG 002080 002081 ATTCCCATCT GCTCCTTTCT GCCTCTTGGC TCTGTTCTCT CTCACTGCTT GCCAGGGACT GCTTTGTCCT AATTACAGGT 002160 002161 GGGTGGACTC ATAGTCCTCA GGCCTAGGTG ACCATGTGGT TTACCATCTC CGTCTTTTCA TTTCACTCCA TTTCCCTACT 002240 002241 TTCCCTTTTT TTCTGATAGT TTGTCCAGAG GGTCTGCATT ATAAGTTATT CTTTTATTCA ACATTAATAA AAATTTCATT 002320 002321 CATCACTACT GCACTACTAA TATCAGAGCC CACCACTCAC AGCACAAGAG ACATTGGCTT CCACCTTTGG TAACAGATGA 002400 002401 TTGCCTATGT TTATTTCCCT TCCCAGGCGG TAACACTGGA TGTAATGTTA GGGCATCTAT GGGATAGGGA GATCTTAGCG 002480 002481 CTGGTCTAAG GAATACAAGT GTTACGCACA GCTCCTCGTC CCCTCCCTGC CTGCCCAGGG CCAGCATCAG GGGCTGTCAT 002560 002561 CACTGGGGGA TGTTCAGCGT GCCAGCCATC CTGAAGGGCT GGATGGATAG GGTGCTGTGC CAGGGCTTTG CCTTTGACAT 002640 002641 CCCAGGATTC TACGATTCCG GTTTGCTCCA GGTATGTGCT CTTGGATAAG GATCACTATG GATAGTTGGA GGGAGGGGAC 002720 002721 AGAGGATGCG TCTTCTATCA AGTTATATTT CTAGTTTCCT TCCTTTTCTT AGCAAATATC GATTGAGCAC CCACTATGTA 002800 002801 CAAAGCACCA TGTGCTGCAC ACGGGTGGAC ACAGCATCGT TTCTGAAATC ATGGAGCTTT TTGTCTGGTG GGGCTGCGAA 002880 002881 CACATCCACA GCATACTACA CGCATGGCAA ACAAGGGAGT GGGTCAGGTG TCAGGTGACG GGGGACCTGG GCAACCTTAT 002960 002961 GTGGGCAACC CGGTGGCCAG CCCTGGCTCC AGAGAGAGTA TCTCCCTGGT GCAGAGCCCA GCCCTGGCCT GGCACAAGTT 003040 003041 CACCCCCTTG AGCATCATGT GCCTGCTGTG AGAAAAGACC ATGCGACACC CACGTGGCAG GATGAGGAGG GCATGGAATC 003120 003121 TGGTAGATGT GCCACATGTG GTAGCTATGA ATTCTTACTA AAACAATGAT TTTTAAGGCT GGGTGCAGTG GCTCACGCCT 003200 003201 GTAATCCCAG CAATTTGGGA GGCCGAGGAG GGTGGATCAC TTGAGGCCAG GAGTTCAAGA CCAGCCTGGC CGACATGGTG 003280 003281 AAACCCCATC TCTACTAAAA ATACAAAAAT TAGCCGGGCA TTGGTGCTAC CACTTACTGA GCAGCCCTGT GTGCTGGGAA 003360 003361 CCTTGTCCTG TGGTCAGTGC CTCGGCCGTA TCCATCACAC ATGGTGTCAT GGAAACCAGG TTTCCACCAG CAACCTGGGC 003440 003441 ATGTTAGAGC TTCTGTGTCT GCAAATGCTT TACTTGACAG ATTTGAAAAG CTTGACCAAT AGGGAAAACA TGCCCTAATT 003520 003521 ATAGCTTTTG ATATGGTTTG GGCAGAAGCT AAGCCAAAGC ACTGCCCTTG GACCCTGGCA AGTGGCACCC CAGGCCCTGC 003600 003601 ATTCTGATGG CCGCATGCTG GTCTCTGCTG GCCATGCCAA CCCCCACATC TTGGTGCCTG CGTGAGTGTC CCTGGGCCTG 003680 003681 AAATGTGGCC GAGTAGTGGC CACCTGCCAA AGGGAAGGTG GTGGGCAGAG CAGTTCCAAC GTGCTGGGGT GTCCCACGAA 003760 003761 GGAACCCCTG GTGAGGGGTG GCAGAGGGAG GGAGTGGGGA GCAGACTCCA GGTCAGGGGC TCCAGGGAAC CCAGAAACCT 003840 003841 AGGGGTCAAC TGTTCTTCCA GGTTGTTTAA GGGAGGTTTG TCGAGACAGG GGGAGAGCTC GTTCTTGAGG GGTAGGGAGT 003920 003921 TTGCTGGGAA AATGCACGCG TCACCCCTTT TCTGTGAACT CTCTCTAGGT GCACGTGCCT TGCCCATGTC CTATTGGTTT 004000 004001 GGTATTTTTT AATTTTCTAT TTGTCAGTGC TCTTCATATA TCAGAGAAAT TAATCCTATT |
Predicted Small Protein
Name | NONHSAT106911_smProtein_2903:3070 |
Length | 56 |
Molecular weight | 5608.3873 |
Aromaticity | 0.0545454545455 |
Instability index | 64.1309090909 |
Isoelectric point | 7.95758056641 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0463895267817 |
Amino acid sequence | MANKGVGQVSGDGGPGQPYVGNPVASPGSRESISLVQSPALAWHKFTPLSIMCLL |
Secondary structure | LLLLLLEEELLLLLLLLLLLLLLLLLLLLLEEEEEEELLHHHHLLLLLLEEEEEL |
PRMN | - |
PiMo | - |