NONHSAT107103

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107103

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1126 nt

Genomic location

chr6-:3399752..3401315

Exon number

3

Exons

3399752..3400609,3400716..3400786,3401119..3401315

Genome context

Sequence
000001 GCATGAGCCA CCATGCCTGT CCCATTGCAG CCATTTTTAA GTGTGCACAA TTTAGTGATA TATTTCCATT GTTGTGCAAG 000080
000081 ACAATGTTTT TTAGAGTGTT AGATGTTCAT TATTATTGAG CAGAAAAAAA TGGAATTGGA AGGCAAGTCG GTAATGCCTA 000160
000161 TTTTTGCTTA AAGTCACCTG AAACATGATA TTCCCGTTTG TCATCTGTAA AACCATGAAG TTCCAGGGAA GTGTTGGTGG 000240
000241 ACATTTGCAT GTTTGTGACG TGATGGCCTG TGAGGGAATC TCTGGGCTCG CAGCAAGCTT GGGAACTTTG GACTGTGGCT 000320
000321 GTCTGGTAGC TTAGAATAGC AGAATAACTG GTGGGTGGGG GCAAGAATCT GCTTCATAAT TGTTTTTCCA GTGGTCAGCT 000400
000401 TAATAAATTA CCTCTCTTAT AGCATCCATT CAGAGCTTTT AAAATTCATT TTAAAATGCA ATCATGGGCG GGGCGCGGTG 000480
000481 GCTCATGCCT GTAATCCCAG CACTTTGGGA GGCCGAGGCG GGTGGATCAC TTGAGGTCAG GAGTTCGAGA CCAGCCTGAC 000560
000561 CAACATGGTG AAACCCCATC TCTATTAAAT GCAAAAAATT AGCCAGGCAT GGTGGTGCAT GCCTGTAATC CCAGCTACTT 000640
000641 GGAAGGCTGA GGCAGGAGAA TCGCTTGAAC CTGGGAGGCG GAGGTTGCAG TGAGCTGAGA TTGTGCCATT GCACTCCAGC 000720
000721 CTGGGCAACA AGAGCAAAAC TCCGTCTCAA AAAAATAAAT GCAATCATAT ATTGCATTTT GAAAGTCTTA ACCACTTCAG 000800
000801 GGGTAGGAGA GGACAATAAA CTCAAGAAAA AATTCTCCTG GACAGATCAT TCCTAGGGCT CTTCTATCGA CTCCCTGAGT 000880
000881 ATCCATCACT CACAGAATGC TTCATTAATT GGTAAGAAAA CCCACTGAAG AAATAGAATA GTGGTACTCA TTTTCAAGAT 000960
000961 TTATCTTATC TGTATGCAAC CTCTCCCTTT CCCTTCCTTG TATTAATCCC TAAAAACGCC TGTAAACATT TTGTTCATAT 001040
001041 TGTTAAATAT TAACTCAGGA CGTTGCTCAT TATCCGTAAC ACAGCTATAG GCTTGGCCCT GTTGTTTGCC ATGTTCTGCC 001120
001121 ATAAAG
[back to top]

Predicted Small Protein

Name NONHSAT107103_smProtein_2:118
Length 39
Molecular weight 4465.3117
Aromaticity 0.184210526316
Instability index 51.8710526316
Isoelectric point 7.77386474609
Runs 9
Runs residual 0.0642313019391
Runs probability 0.0334452099158
Amino acid sequence MSHHACPIAAIFKCAQFSDIFPLLCKTMFFRVLDVHYY
Secondary structure LLLLLLHHHHHHHHHHLLLHHHHHHHHHLEEEELLEEL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLL
PiMo oooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiii