NONHSAT107105

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107105

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

599 nt

Genomic location

chr6-:3399752..3401315

Exon number

3

Exons

3399752..3400122,3400687..3400786,3401188..3401315

Genome context

Sequence
000001 GCATGAGCCA CCATGCCTGT CCCATTGCAG CCATTTTTAA GTGTGCACAA TTTAGTGATA TATTTCCATT GTTGTGCAAG 000080
000081 ACAATGTTTT TTAGAGTGTT AGATGTTCAT TATTATTGAG CAGAAAAATT GTCATCTGTA AAACCATGAA GTTCCAGGGA 000160
000161 AGTGTTGGTG GACATTTGCA TGTTTGTGAC GTGATGGCCA CCATCCTACT GCAAGCACCA GAGCTGCCTA AATGCAATCA 000240
000241 TATATTGCAT TTTGAAAGTC TTAACCACTT CAGGGGTAGG AGAGGACAAT AAACTCAAGA AAAAATTCTC CTGGACAGAT 000320
000321 CATTCCTAGG GCTCTTCTAT CGACTCCCTG AGTATCCATC ACTCACAGAA TGCTTCATTA ATTGGTAAGA AAACCCACTG 000400
000401 AAGAAATAGA ATAGTGGTAC TCATTTTCAA GATTTATCTT ATCTGTATGC AACCTCTCCC TTTCCCTTCC TTGTATTAAT 000480
000481 CCCTAAAAAC GCCTGTAAAC ATTTTGTTCA TATTGTTAAA TATTAACTCA GGACGTTGCT CATTATCCGT AACACAGCTA 000560
000561 TAGGCTTGGC CCTGTTGTTT GCCATGTTCT GCCATAAAG
[back to top]

Predicted Small Protein

Name NONHSAT107105_smProtein_2:118
Length 39
Molecular weight 4465.3117
Aromaticity 0.184210526316
Instability index 51.8710526316
Isoelectric point 7.77386474609
Runs 9
Runs residual 0.0642313019391
Runs probability 0.0334452099158
Amino acid sequence MSHHACPIAAIFKCAQFSDIFPLLCKTMFFRVLDVHYY
Secondary structure LLLLLLHHHHHHHHHHLLLHHHHHHHHHLEEEELLEEL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLL
PiMo oooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiii