NONHSAT107131
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107131 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2725 nt |
Genomic location |
chr6+:3464620..3478886 |
Exon number |
16 |
Exons |
3464620..3465025,3465208..3465398,3465651..3465804,3466291..3466386,3466474..3466581,3468240..3468323,3468443..3468527,3473172..3473226,3475183..3475261,3476742..3477224,3477305..3477414,3477514..3477609,3477691..3477861,3477954..3478033,3478107..3478260,3478514..3478886 |
Genome context |
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Sequence |
000001 AGCAATGTGA GAATGAACTA ATACAATCAG TAATTTCTCT CTGTATAGGT TTTTATCTCT ATGATGACTT TTTTTTTCTT 000080
000081 TTTAGACAGA GTTTCGCTCT TGTTGCCTAG GCTGGAGTGC AATGCCACGA TCTCAGCTCA ACTCAACCTC TGCCTCCCGG 000160 000161 GTTCAAGTGA TTCTCCTGCC TCAGCCTCTT GAGTATCTGA GATTACAGGC ATGTGCCACC ATGCCCGGCT AATTTTATAT 000240 000241 TTTTAGTAGA GATGGCGTTT CTCCATGTTG GTCAGGCTGG TCTCGAACTC CCGACCTCCA ATGATCCGTC CGCCTTGGCC 000320 000321 TCCCAAAGTG CTGGGATTAT AGGCGTGAGC CACTGCACCC AGATGTGATG ACTTTTTTAA TCAAGAAAAG GTTTAATGGT 000400 000401 TTGAAAGGGA TTACAGGCAT GTGCCACCAC ACCTGGCTAA TTTTGTATAT ATATATATTT TTTTTTAGTT TCTCCATGTT 000480 000481 GGTCAGGTTG GTCTCGAACT CCCGACCTCA GGTGATCCGC CCGTCTTGGC CTCCCAAAGT GCTGGGATTA CAGGCATGAG 000560 000561 CCACCGTGCC TGGCTGAAAA ATAAATTTTA ATGAGAGCTT AGAGCTTTTT CTTCTGCCTT GTTAACTTTA TCAATGATTC 000640 000641 CATTTCTTAA AAGTTAACAT AGAACCTTTA GGGGAGGCTG TGAAATACAT GTGTATGGAA TAACCAGCCT ACTTTTAGGT 000720 000721 AATGTAACAG AGCAGACTGG AGCCTCCAGG TTCTGCTCAC TGCAACCTCC GCCTCCCAGA TTCAAGGGAT TCTTCTGCCT 000800 000801 CAGCCTCCCG AGTAGCTGGG ATTACAGGCA TGTGCCACCA TGCCTGGCAG CCTCCGAAAG TGCTGGAATT ACAGGCGTGA 000880 000881 GCCACTGCGC CCAGCAACAT TACAAGTTTT AAAGGGAAGT TAAGAAAACC CCAAAATACC TCACCTTTAA AAAATAGATA 000960 000961 AAAGCCTACA TTCACAAGGA TAAAGTTTCA AGCCCAAAGA AACACCTCAC AGGACCTAGT GGGGAAGGTG GAGCATCTAC 001040 001041 ACCTGAGTTA CTGCCCATCA CACAGGTTGG TGTGAGGAAC CAATGAGATA ATGTGAATGA ATTCGGTATG ATTGAGTTGC 001120 001121 TATCGGAAGC TCATCTTGCA CTTCTATTAT CTGGATGAGG TTGCTTTATT TTAAAAACAC CTGACCTCGT GATCCACCTG 001200 001201 CCTCAGCCTC CCAAAGTGCT GGGATTACAG GTGTGAGCCA CTGCACCCAG CCAAGGAAGT TGCCTAGGCC GGTCTCAAAC 001280 001281 TACTGGGCTC AAGCGATCTG CCTGTCTTGG CCTCCCAAAG TTCTGGGATT ACAGGCGTGA GCCACTGCAC CCAGCCTGCT 001360 001361 CCATGATTTC TGACACTGTG GTGGAAATTC CTTTCTACTC CTCCCTCCTC CCAGCCCCAC CTGTTCTGCA GCAGAACCCC 001440 001441 CATTCTGATA CTGGTGTGTA TCTCCTCTAC CCATGCATAG GTGTACATAA TCAACATTTA GTAATGTTTT CTATTTTATA 001520 001521 CAAATAATAC TTCATACAGT TTTCTACAGC TTACACTTCA CTCAGTTCCA TGTTTTCAAG ACTTGTCTCA GTTGATATTT 001600 001601 GGAGATCTAG TGTATTCATT TTGAACATCT ATTTCTGCAT TATTTCTATG AATTTATTAA AATGTATGCA TTCGTTTACT 001680 001681 TATTGGTGAA TATGTAAGTC ATTTTTAATT GTTCATTCTC AAAAACAATG ATTTGCAGGG ACCTTGATAC TGGCTTTAAC 001760 001761 TTTGTTTCTG TTGTCTTTTG TTATATAAAA ATATTACATT TTCATTTTGT CAAACTTATC AATCTTTTTC TGTTGTGGCT 001840 001841 TATGCTTCTT TTTGACTGCA GTTTTCTTAA CAATTTTCTT AACTATTAAG AACATTCTCA GGCCCCCGCC CAGACTTACA 001920 001921 GAATCAGAAT CCACATTTTC ACAAGCCGTT TTGCGGTAGA CAATTTTCCC ATTGATGGAA CGGGGCTCGG GGGGCGGGAG 002000 002001 GTGATGGTGG TTTCAGGATT AAACTGTTCC ATCTCAGATC ATCAGGCGTT AGATTCTCAT AAGGAGCATG CAACCTGGAT 002080 002081 CCCTTGCACG CACAGTTCAC GACAGGGTTT GTGCTCCTGG TTCCTAACAG ACCACAGACT GGAACCAGGG GTCAGACCCC 002160 002161 TGCCCTAAAG GGCTGGCAAA TTCTTCCAGT TAGAAATAGG TACCCACTCA CTGGGAGGTT GGAGGACTGG CTAACTCCCT 002240 002241 TGGAATTTCT CAGGGATTCC TGATGAAAGT GAGTGGACTC ACTCCCAGGT GCCCAAACAC CTGCCCTCTG CTGGGCTGCC 002320 002321 TTCCCTCTGA TCTGGTACAA TTATTGTGGC AAGCTTTTAA TGGGAGGCAT TTGTGTACTG AACTAAGTAT CTGGGTGGCG 002400 002401 GAGTCAATAC AGTATAAATG TTTTTAGGTC ATCTGTCTTT GAGGTGGGCT GTTCACCTCC TTGTTCCCTT GTGGACCCCA 002480 002481 CTCTTGGGGT CCTGCAGCCT GTCTTCTTTC CCTCCATCAG CAGCTCCCAG GGAGAATGCA TCCTATCCCT CTGAGGTGCT 002560 002561 GTCATCTGAC ACCCTCCTGG ACAGTCCCCC TCATTTGTGC TTTAAAGTGT TTGGCAACTG CCCCTTGTCA TCAGCACTCT 002640 002641 CAGTCCCACT GTTATTCTGG TGTCTTTGAT GTGTATGTGG CTGACCCAAC TGATACCCTG ACTTCTCAGC TCCTTGACTT 002720 002721 CCTCA |
Predicted Small Protein
Name | NONHSAT107131_smProtein_2417:2668 |
Length | 84 |
Molecular weight | 9039.5016 |
Aromaticity | 0.10843373494 |
Instability index | 56.9253012048 |
Isoelectric point | 6.21771240234 |
Runs | 9 |
Runs residual | 0.031593038822 |
Runs probability | 0.031708178767 |
Amino acid sequence | MFLGHLSLRWAVHLLVPLWTPLLGSCSLSSFPPSAAPRENASYPSEVLSSDTLLDSPPHL CFKVFGNCPLSSALSVPLLFWCL |
Secondary structure | LLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLL EEEEELLLLLLLLLLLLHHHHLL |
PRMN | - |
PiMo | - |