NONHSAT107139
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107139 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2419 nt |
Genomic location |
chr6+:3476798..3480072 |
Exon number |
9 |
Exons |
3476798..3477560,3477572..3477676,3477784..3477885,3477974..3478075,3478177..3478263,3478433..3478633,3478834..3479012,3479096..3479199,3479297..3480072 |
Genome context |
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Sequence |
000001 CCAAAGTTCT GGGATTACAG GCGTGAGCCA CTGCACCCAG CCTGCTCCAT GATTTCTGAC ACTGTGGTGG AAATTCCTTT 000080
000081 CTACTCCTCC CTCCTCCCAG CCCCACCTGT TCTGCAGCAG AACCCCCATT CTGATACTGG TGTGTATCTC CTCTACCCAT 000160 000161 GCATAGGTGT ACATAATCAA CATTTAGTAA TGTTTTCTAT TTTATACAAA TAATACTTCA TACAGTTTTC TACAGCTTAC 000240 000241 ACTTCACTCA GTTCCATGTT TTCAAGACTT GTCTCAGTTG ATATTTGGAG ATCTAGTGTA TTCATTTTGA ACATCTATTT 000320 000321 CTGCATTATT TCTATGAATT TATTAAAATG TATGCATTCG TTTACTTATT GGTGAATATG TAAGTCATTT TTAATTGTTC 000400 000401 ATTCTCAAAA ACAATGATTT GCAGGGATTT TTGTGTATCC GGAATACTCA TTCCCTATCA GTTTCATGCA TTACAAATAT 000480 000481 ATTCCTCCAA TCTGTGGCTC CTTTTGTCCT TGATACTGGC TTTAACTTTG TTTCTGTTGT CTTTTGTTAT ATAAAAATAT 000560 000561 TACATTTTCA TTTTGTCAAA CTTATCAATC TTTTTCTGTT GTGGCTTATG CTTCTTTTAT CTTATTTAAG AAATGATAAA 000640 000641 GATGCACTCT GTAACTCAGG ATTTTGTAAA CAGTAAGCAT CAGTGGAGAA GAATTAATAC AATACTGTGG GTGAACTTGA 000720 000721 CTGCAGTTTT CTTAACAATT TTCTTAACTA TTAAGAACAT TCTCCAGACT TACAGAATCA GAATCCACAT TTTCACAAGC 000800 000801 CCCAGGTCAT TCCTAAGTGC ATTAAAACCT AGGTATAGGC CACACGAAGC TGCTTCTGCT GCCTCTGTAT CAGGCGTTAG 000880 000881 ATTCTCATAA GGAGCATGCA ACCTGGATCC CTTGCACGCA CAGTTCACGA CAGGGTTTGT GCTCCTGTGA GAATCTAATG 000960 000961 CCCCCACTGA CTGGAACCAG GGGTCAGACC CCTGCCCTAA AGGGCTGGCA AATTCTTCCA GTTAGAAATA GAGGCAAGTC 001040 001041 TTGATGCGGT CCTCTTTACT TCTTAATCGT CTGTGAGTGG ACTCACTCCC AGGTGCCCAA ACACCTGCCC TCTGCTGGGC 001120 001121 TGCCTTCCCT CTGATCTGGT ACAATTATTG TGGCAATCTA ACGTTCTATC ACTTGTGTTA ATAATTGCCT CTACTTTCAC 001200 001201 AGTCTCTTTT TCACAGAGAA ACTTTAGAGA AACATTTTGG GCTTTTAATG GGAGGCATTT GTGTACTGAA CTAAGTATCT 001280 001281 GGGTGGCGGA GTCAATACAG TATAAATGTT TTTAGGTCAT CTGTCTTTGA GGTGGGCTGT TCACCTCCTT GTTCCCTTGT 001360 001361 GTATGTGGCT GACCCAACTG ATACCCTGAC TTCTCAGCTC CTTGACTTCC TCAGCTTGTG ACCTTTTTCT CCACTCCATC 001440 001441 TTTCCCACAG CCATGATTCT AGTAGTCAGC TCAGGCTGCC ATAAAAAATA CTATTGACTG GGTGGCTTAA GAAACAGAAA 001520 001521 TTAATTTCTC CCAGTTCCGT CACCAACTCA CCTATCTAGG AGAGTGAGAG AGAAAGCTCT CTTTCTTCCT CTTATTATAA 001600 001601 GGCCACAGTT CTATTGTATT AGGGATGAAT CTTTATGATC TAAGTCTCTA GCATCCCACC CCTGCCCCCC AAATTCATGT 001680 001681 TCTTATCTCA TGCAAAATAT ATTCATTTCA TCCCAACAGC TCCAAAAGTT TTAACTCATT TCAGCATCAA CTCCAAAGTC 001760 001761 TAAAGTCCAA AGGCTCATCT AAATATCATC TAAATCAGGT ATGAGTGAGA TTTGATGATG AATCTTGAGG CAAAATTCCT 001840 001841 CTCTGGCTGA AACCTGTGAA CTCACGCAGG TTATCTGTTT CTAAAATACA ATGGTGGGAC AGGCATAGGA GGGACATTCC 001920 001921 CATTCCAAAA GAGATAAATT GAACAGAAGA AAGGGACAGC AGGCACCAAG CAAGTCCAAA ACCTAGTTAG GCAAATCCCA 002000 002001 ATATATCTTA AGGTTCTAGG ATAATCCTCT AGTTTGTGCC CTGCCTTCCA GACCCACTGG CACAGCTGTT TGGAAGGGGC 002080 002081 ATCTGTAATA TGAATAGGGT GAGAATTTCC CAAATCTTCA AGTTCTGGTT CCTTTTTAAT AATTCCTTTC TTCTTCTTCT 002160 002161 TCTTCTTTTT GAGATGGAGT TTCGCACTGT CGTGCCCTGG CTGGCGTGCA ATGGCGCAAT CTCGGCTCAC TGCAACCTCC 002240 002241 GCCTCCCAGG TTCAAGTGAT TGTCCTGCCT CAGCCTCCCA AGCAGCTAGG ATTACAGGCG CCCACCACCA CGCCTGGCTA 002320 002321 ATTTTTTGTA TTTTTAGTAG AGATGGGGTT TCACTATGTT GGCCAGGCTG TTCTGGAACT CCTGACCTCA TGATCTGCCC 002400 002401 GCCTCGGCCT CCCAAAGTG |
Predicted Small Protein
Name | NONHSAT107139_smProtein_632:889 |
Length | 86 |
Molecular weight | 9929.5426 |
Aromaticity | 0.117647058824 |
Instability index | 49.7152941176 |
Isoelectric point | 11.7997436523 |
Runs | 15 |
Runs residual | 0.0399286987522 |
Runs probability | 0.0349584878996 |
Amino acid sequence | MIKMHSVTQDFVNSKHQWRRINTILWVNLTAVFLTIFLTIKNILQTYRIRIHIFTSPRSF LSALKPRYRPHEAASAASVSGVRFS |
Secondary structure | LEEEEEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEEEEELLLHHH HHHLLLLLLLHHHHLHHHLLLEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiii |