NONHSAT107141

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107141

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1316 nt

Genomic location

chr6+:3480109..3483790

Exon number

9

Exons

3480109..3480185,3481643..3481771,3482003..3482125,3482206..3482315,3482415..3482510,3482592..3482762,3482855..3482934,3483008..3483161,3483415..3483790

Genome context

Sequence
000001 TACAATTCCT TTTTTCAATC CATCTTCCTT TTTTCACATT TGACTATAAG CAGTAAGGAG AAACCAAGCC TGTCCTTGAC 000080
000081 AGCCTTTGAT ATTTCCAGAG TCAATACCTG CTTTCCATTC TCCACAGCAT CTAATATAAG TCATGGCTTC TCATCTGTCC 000160
000161 TGCTTCCCCG CTTCGCGTTC ACCACTGTGA GCACAACTCC AGCTGCAGCG GCGGCTCTGT CCCACAAGAC TGCCTCACCT 000240
000241 CTGATGCCAG CCACAAGTTC CAGGTCTCCA GATGACTACC GCTTCTATTT GACTTGGCTA CAAATTCAGG GGTTTCCGGC 000320
000321 CCCACCTCAA AAAGTATAAT ATAATGTACT TTCATTATAA AGAATATAAA AGTATAATAT ACTTTTATTA AAAAGAATAT 000400
000401 AATATATATA AAGAACAGCC AAATCACGAG ATGCATAAGA ATACCCCCAA GCCTCATTTT TCAGAGTTTT TCTAGAAGTT 000480
000481 TTATTACTTA GAGATGATTG ATTAAATTAT TGGCCATTGG TGACTGAACT CAGTCGCAGC CCCTCCCCTA AAGCTATCTG 000560
000561 GGGGCCCACC AACAGTTACC TCATTAGCAT AAACTCAGAT GTAGTCAGAA GGGGCTTGTT ATAGATAACA AAATACACTC 000640
000641 CTATGGCTCA GGAAATCTCA AGAGTTTTAG GAGCTCTGTG CCAGGAACCG GGGGACAAAG ACCAAAAGCA GGACGCTGGC 000720
000721 AGACACAGCG GGCCGTCCTG CGTGCCCACA CGTGGTGCCA TCAGCGCAGC ATTTATGGCC CCACATACTC CTGTATCCCC 000800
000801 ACCATTCTAG CCAGGTGCCT GGCTCACAGT GGTCGGCAAT GGTTTTTAAA ATGGATCAGT GAGTGTTTGC ATCTCTTATT 000880
000881 CTGGGCATAA ATTCATTCAG CACCTTGTAT GTCAGAGACT GCTGTAGGTG CTGAACACAG GGACCTGGGG AACAATGGTT 000960
000961 TATTTGATCC TTAGCATTTT CCAGCTACTG GGAAGACTCC ACCATTGGTG AGAACAGAAG CCCCACAGAC TCTTCTCTCT 001040
001041 GTCTGAGAGG TGAGGGAGTG GAGATTAGGG GTTCCAACTC CGCCTGGCTC AAATTCTGCC TCCACACTCC CCTGCACAAG 001120
001121 TTACTTAACT CGGTTTCTAC TTGCCTTAGT TTCTGCATTT ATAAAATGAG GTGAGAATAA TACTAATACC TCTTAGAATT 001200
001201 GATTCAAGGA GCAAATGAAC ACTTACAGCC TGTCATCAAT ACTAATAAAT ATAAACTGCC ATTACTTTTT CTCCTTTATA 001280
001281 ATATCCTTTA TGGGGTAAAA ATAAGAAGAT ATGTCT
[back to top]

Predicted Small Protein

Name NONHSAT107141_smProtein_1214:1297
Length 28
Molecular weight 3163.6838
Aromaticity 0.222222222222
Instability index 64.3074074074
Isoelectric point 6.48699951172
Runs 6
Runs residual 0.0155662909286
Runs probability 0.0228316551846
Amino acid sequence MNTYSLSSILININCHYFFSFIISFMG
Secondary structure LLLLHHHHHHHHLLLHHHHHHEEELLL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLL
PiMo oooooooTTTTTTTTTTTTTTTTTTii