NONHSAT107174
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107174 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1673 nt |
Genomic location |
chr6-:3619426..3622780 |
Exon number |
10 |
Exons |
3619426..3619697,3619809..3619935,3620064..3620090,3620705..3620846,3621026..3621156,3621299..3621481,3621572..3621659,3621782..3621846,3622013..3622208,3622339..3622780 |
Genome context |
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Sequence |
000001 ACTCTCTGAG AGTGAGATGC CGAATGTGCA TTGTAAACCA TTATCCCAGA TGAATCTGAA GTTGAAGAAC CACCGTATAG 000080
000081 TATAGACAAG AATGTCTAAT TTTGTTCTTG GGAGAAGAAT AGTAACCAAT ACCTGGGGTT AAATATTTAC ATGTTCCATA 000160 000161 CTTCAGGTGA TCTCAGACCA CAACTGGTAA GGTATATCCT GGAAGAAGCA TCACCCTCCT TTTATAGCTA AAATAATGGA 000240 000241 GCGAGAATAT CATATAAAAG TTAAGCCTCA GCCAGGCACG GTGTCTCACG CCTGTAATCC CAGCACTTTG GGAGGCCAAG 000320 000321 GCAGGAGGAT CACCTGAGGT CAGGAATTCG AGACCAGCCT GACCAATATG ATGAAACTCC ATCTCTATTA AAAATACAAA 000400 000401 AATTAGCCAG GTGTGGTGGC GCACACCTGT AATCCCAGCT ACAAAAAGTT AAGCCTCATA GCGTCTGGCA ATTTGGGTTC 000480 000481 TTGAAGCTAG AGCCTTTTGT TCCTTCTTCA AACCCCCATG GCCTTTCCTT TTCCTAGCAG ATCTCCACCT AGTTCAGGTA 000560 000561 TTCATGCTCC TCTACCCAGA GAGGTCTGGG GTGGGGAAGA TCCTGCTCAG GTTAAGCCGT GCTTGGTGCT GGGTAAGCGC 000640 000641 CCTTGGCTCC ATTCTGGTCA GTGAGACTAG AAGGGAGGGC TGGCCAGTGG AGAAGAAAGC AAAGTCACAG CCTGTCAGCT 000720 000721 ACTCAAGAGC AAAGCAGTGA CCACCAGATT GTTATTTTTA ATTGTTCATA TTATTTGAAC AAATTCTGTG ATTAAATGAG 000800 000801 GACTGACTGA GGTGCAGCCA TTTTTCACAG GACTTTGAGC TGTGTGGAGG TGTCATGAGT GAGAGGCGGC AATTAGAGAA 000880 000881 GGAGAGAAGC TGTCAGAGCA AGTGCAGGCT GAGGCTGGTG AGGCCTGGGG AGCAGGGAGC CCTAGGGAAC CCATGGAGGG 000960 000961 CAAATCCATG AGGACTGGTA TGGCTTACAG ACATATTTTT CAAGCTGTGG GTTGTGACCC TTTTAGTAGC TCATGAAATC 001040 001041 AACTTAGTGG GTTGTGACCA GCTCTTAAAT CAAGGCTGGA AGGTGGGTGA AATAGAATAG GAAGTCGCAT GTGTGGTGAG 001120 001121 TGTAAGTATG TGTGCATATG TGTATGTGCC TGTGTGTGTG CGCGTGCATG GTGTTTGTGT ATACCATATT CCAATGTAAA 001200 001201 CATCTTTTTG CAGTGGTTGT GGTTGTGACC TGGAGGCTGG CCGGCCGCCT GCTCCTCTCC ACCCTGAGGA TTCCAGATGA 001280 001281 TGCGGAGTGT TAGGCATTTT TAAGAGGGGA AAAAGATCCT CACCTCTTTT AATTCTCAAA CACCGCTTGA ATACACAGAT 001360 001361 TTCATGCTTG TGACACCTTT CTTCCTTCAA AGATGCTGCC GGTGTGTCGA TGGCAAATAA AACAGGCCCT GCTTCGCGGT 001440 001441 GTCCATGGCC ACCCCCGCCC CTCATAATGA CCCTCCACTC CCCCACCCAG AAATAGGCTC CCCTCCAAAG GCACTGGGTG 001520 001521 TATCCGAAGA GAATGATCTA CACAAGGAGT AGCCTCCTTT CCTGGTTCCA GAAATCAGAA TTAAGGGGGA ACAGTTTGCC 001600 001601 TGGAAGGGAG CCAAAGTCTA GAGTCTTTTG TTCCCTCTTC AAGTCCCTAT GGCCTTTCCT TTTCCTAACA TCT |
Predicted Small Protein
Name | NONHSAT107174_smProtein_563:739 |
Length | 59 |
Molecular weight | 6603.6785 |
Aromaticity | 0.0862068965517 |
Instability index | 70.0413793103 |
Isoelectric point | 10.3692016602 |
Runs | 7 |
Runs residual | 0.035903751421 |
Runs probability | 0.0258283493578 |
Amino acid sequence | MLLYPERSGVGKILLRLSRAWCWVSALGSILVSETRREGWPVEKKAKSQPVSYSRAKQ |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHHHLLEEEELLLLLLLLEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |