NONHSAT107178
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107178 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3034 nt |
Genomic location |
chr6-:3658052..3719882 |
Exon number |
10 |
Exons |
3658052..3658539,3663156..3663421,3663837..3664139,3688379..3688875,3693701..3693786,3703551..3704211,3716781..3716870,3717096..3717340,3718068..3718178,3719596..3719882 |
Genome context |
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Sequence |
000001 ATGCCCCACC TTAAGAGCTG TAATACTCAC TGCAAGGGTC TGCAGCTTCA TTCTTGAAGT CAGACCAAGA ACCCAGCAAT 000080
000081 TCCCAACACA CAGGGACCAG CTTCTTTCCT AACTCACTTA GGCTCTTCGT GCTGCTCTGG CAACTAACAC CCTTGGCTGC 000160 000161 AGGGGCTTGG ACACTACCCT TAGTCACTGA CAATTGTGTG AAGGCTGCTG TCGTTAACTT CACTTGATCA CCTTAGGCTC 000240 000241 CTGTGAAGTG GTGAGCAATT CAAACAAATT CCTGTCGTCA AATCATGCAT TCATGGTCAA TAATAACGTG TCTTGAAGCT 000320 000321 ATATCTATAT TTTCATCTGT CTATCTCTTA TCTACCTGAA GCACTTCGGA AATAGATGAT CTGCTCAAAC TTGATAAGGG 000400 000401 TTAGGAGGGA GGACCCTCTT CCTAGTCTTA GAGTCCCAGC TCACCAGGGA AACATTTCTC CAGGAGGAGT GTTGATGGTG 000480 000481 GGAAGACAGG GCACTTAGAT TTCCGTGCTC TGTGTCCTCT TGGATGGAAC TATTATGGCT GACTGCTGGA TTAGACACTC 000560 000561 AAAAGTTGGT TGGCTTGTTC TAGATTCCTC TCCACCAGGT AGTGCTTGAT AGGCAATGAA CAAGTTTGCT TCTGCAATGC 000640 000641 TACGCTGGAG TGCAATGGCG TGATTATGGC TCACTGCAGC CTTGACCTCC TGGACCCAGG TGATCCTCCC ACTTTAGCCT 000720 000721 TTCAAGTAGC TGGCAAGGGC AACCCGCTCA GGTACCTTTC CACGCTGTGG AAACTTTGTG CTTTCACTCT TCACAGTAAA 000800 000801 TCCTGCTGCT GCTCACTCTT TGGGTCTGCG CCAACTTAAG AGCTGTAACA CTCACAGTGA AGGTCCGGGG CTTCATTCTT 000880 000881 GAAGTCAGCG AGACCACGAA CCCACCAGAA GGAACCAACT CTGGACACAT CTCCGGACAC AATGAGATTT GGATGGGGTC 000960 000961 ACACGTCCAG ATGATATCAT CTTCCCTGTC AGCACAGGGT CAGGCAGGTC CTCTTTCCTC TTCCTCAGAG TAGACTGTTT 001040 001041 TCCCTCATGG TGTTGACCAC ATGTGAAATT ATATCTCTAT TGTTTTGTCC CTTGTCAGCT TACCTGTTGG ACCTAAATGT 001120 001121 GATTATATCA GTTCTGTATC TGTTTGGGTT CATGGCTGTT CTCCTGAATC TAGCACGGGG CCTGATCGTG TAATACGTAC 001200 001201 TCAAGGAATC TGCAAGTCTG CAGGAAGGTG AATTGGCTCT CAGGTGTTTT AAGTGAACTG TAGGGTTGAT ACATGGCCTA 001280 001281 TATATTTACT CCCAGAAAAC TAGTCAGCCC ACTGCGTTTC ATAAAGGGAA AAGATGGTCA CAGCAGAATC CCAGCAGAAG 001360 001361 CCTGCTACAG GGCTGGTTGT GGATGTGGGG GCCAAAAGAA AACAAGTTTT ATTTTTATCA CCAGAACATT CTGATAAAAA 001440 001441 TATTATGAGA TTAGCTACCT TTATTCTCTG GGCCTTGACT CATTAAGAAG AAAAGAAAGA GCACTTGGAG GTCTGCTTGG 001520 001521 AGATCCCTGA GGTTTTTCAC AGGCACAATG TCCTTATTTG GGAGCCTCAA AATACCAGAC TAACATTGCT CAAAGCAGCT 001600 001601 TTGGGAAGAG GGCAGGTGTC TGAGATGCTG AGAGGCCAAC TGAGCAGTTT TTTAGCTGGA GCCATGGGCC ACACCAGGAA 001680 001681 CAAACCACTG GACCAAATTG ACTCAGGACA CCTGCTCTGG ACCCAGTTTC TTCTCATGTC TCCTCACCCC TAACTCTGCC 001760 001761 CACCACCTCC CACTTCCTCT CTGTTCCCCA TCCCATCCCA GGTTTGTATT TAAATTTCTG CATAATGCAT GTTCTCTGCA 001840 001841 TGTTCTGAAG TACTTTCCAT CAAGTCCTTC ATTTTAAAAG TGTTTCTTTT AAATGAAGCT GTGCATAACC TCTTTTTGAG 001920 001921 GCTCTCTTTG GCTTTTCTTG CACAATTTTA AATTGACCAG GTCTACTTGC AAAAATAGAG TCCACCTGTC CCGAGTTGGA 002000 002001 AGTCTGAACT CATGTTCCTG GATTCCTCCC ATGCATCTTG GTGCTGGTGT GGGGCCTGAA CTCAGCCAAT CCGCAACACC 002080 002081 TCCAGGAGTC TTCCTCTTAG ATGCTGAGGC CACGGAGAAG GAAGCAGCAC AAAGAATGAA CCCTGGAGAG GGTGCCAGAG 002160 002161 GCAGGCGGGT TCCAGCCATG TGGCGGCACA GCCTTACTGG GATAGTCTAG CTGTGTCACT CAGGTACGGT TGCTCTCTGA 002240 002241 GAAGCCGCCA AACCCAACCC TTTCACACAC ACCTAGGATG CACGGGGGAA GAAGAGCTCA CGGCAGGCGC CATCTCCAGA 002320 002321 AAGGATCCAC TGCAGGTGGT TGGTGAGTCC AGATGGCTCC CCCAGATGAC ACTGCTGGGT GGCAACCTAA TTATTTTTCA 002400 002401 TTAACTTTTA ATTATGGAAC ATTTCAAACG TGTGCACAAT TAAAGAGAGT CGTACAATGA ACCTCGTGTG TCCGAAACTC 002480 002481 AACTTCGACA ACGATCAACT AAATGCCCAA TCTTGTTTTA TCTGTATCTC CACACACTTC CCCCTCCACA GACTACGACA 002560 002561 ACGTGCCTAG GCCCATCAGA GTCTGCCCTC CACCCACCTT CTCAGCCTCC TCTATGATCC TCTTTTCCCA GCCTGAAGCT 002640 002641 CACGTCTCCT GACTGCTCTG GCCCAGTATC TGCCACACTC TTCATGCTTT GGTGCCTTTG TGTCTTGTCC CTCAGCCTGG 002720 002721 AATACCCTTC TCTCTTTCTC CCCTGCAGTG AATTCCTGCT CATCCTTCAA GATCAGTGGA AAACATAGCT CTTCTTTGAA 002800 002801 GCCTTCCCTG ACCAGCTCTG AGCACAGTTA GTTGTTCCTT TCCTGGAGGT CCAGTAGGAT CTAGAGTCAC TGCCTCCTTG 002880 002881 TAGAAAGACC CTTCACATGG TACCAGAGAT GGTAGTAAAC ATGCTTGAGT CAGGAAAGAC TTTTCCAACT TTTATTACTG 002960 002961 TACTAATGCA TTTAACTAAC ACAGATATGG AGACACTGTG TTGATGCCAG AGTATCTGTT ATATCCAAAT AAGG |
Predicted Small Protein
Name | NONHSAT107178_smProtein_2030:2209 |
Length | 60 |
Molecular weight | 6210.0076 |
Aromaticity | 0.0338983050847 |
Instability index | 47.3881355932 |
Isoelectric point | 6.71380615234 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0258031140384 |
Amino acid sequence | MHLGAGVGPELSQSATPPGVFLLDAEATEKEAAQRMNPGEGARGRRVPAMWRHSLTGIV |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEELLHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHLLLL |
PRMN | - |
PiMo | - |