NONHSAT107271
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107271 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1498 nt |
Genomic location |
chr6+:4043970..4046384 |
Exon number |
3 |
Exons |
4043970..4044158,4044529..4044754,4045302..4046384 |
Genome context |
|
Sequence |
000001 CAGCAACTCT TAGCCATGAA TGTATTTGGA TAGCATCCAA TTTTATGAAA GTATTATCTT CTGTATTGTT ATTACAGAAA 000080
000081 TATAAATACC TTGCTGAAGA TAGCAACATG TCTGTGCCAT CTGAACCAAG CAGCCCCCAG AGCAGTACGA GAACACGATC 000160 000161 ACCATCTCCA GATGACATTC TGGAGCGAGT GATTTTATTC CCCTTCTGGG TACTTGTTTG TGTCTCTGTC AGTTAAGAAC 000240 000241 ATTAATGTTT TAAAACATTA AATAAGAGGT TTCCACTTTT TGGTTACCCC AAAAGATAGT TTGTATAGGA AAGGCAGGGT 000320 000321 AAATACATGT TTATTATTTT CTTTATTTAC CAATTTTTAG AATACAGTTG GTGTCCTAAC AACCTCCAGA GATGTCTAAT 000400 000401 GAGATTTTGA CTGTTAGCCA GGATGGTCTC GATCTCCTGA CCTCGTGATC TGCCTGTCGG CCTCCCAAAG TGCTGGGATT 000480 000481 ACAGGCGTGA GCCACCACGC CCAGCTGACA GTACACTGTT GAACGGACAT GGCTGTGTTC CAGAAAAAAC TTTGGCACTG 000560 000561 AAATTTGAAT TTCATCTAAT TTTCACTTGC CACAAAGTAT TCTGTTCCCC CACCCCCGAA CACTTACAAA TGTAAAAGTA 000640 000641 GGCCATACAG AAAGAAGCAG CCAGCTAGAT TTGGCTCACA GTCTGTATAT AGTTTACCGA CTCCTGCTCT AGCAAGATGC 000720 000721 ACAGGTTTAT CTTGTGCATG TCCTGCCCAG AGCAGAATCA GCTATTTCTC CAAGGATCCC TGGTTCCATT TAATAGGAAA 000800 000801 TGCCATTTAG ACATCACAGC ACACTTACTA GTGTCTGTAA TTTCTGGGCC TTTGCACTGG ACAAAGTTAG GAAGTAGATA 000880 000881 CTCTTTTGGA AAGGAGGAGT TTACACAGAT ATTGCCAATT TAAAATTGAG ATTATTGGGG TTTATTAACT TATGATTTTA 000960 000961 TATTTCTATC TCTTATTACA GTGAAAAATT TAGTTCTTAA CATGATTACA GATAGGTTAT CTTGAAACTT ATACACATTA 001040 001041 GATATCAGTA TGATTATCAT TACTACATAT ACTAACTGTG GCTTAAAATT TCAGTGGTTG TTTTTAGGAT ACATTCTAAG 001120 001121 TTGTATAGGC ACAATTCTCT GTCTTTTAAA ATCATTTGAA ATCTCTGTAT GGTATGCCAC AAATTTGATA GGCTTAGGTT 001200 001201 TATTTTCATT TGCTTTTGTT TTTTAGGAAT CATCTTTTTT TCTTAATAAT ACATTCTTTC ATGTATGCAT GTATGTGTGT 001280 001281 ATATGTTGTA TCCTACCTAC ACACACAAAA CCAAACTATA CATACTTAGA TCGATATACT TTTCCTCACT CCTTTTTATA 001360 001361 GGCTCCGCCA TAGTTTATTC AGTCAGACTT TGATATTTGA ATTGTGTCCA GTTTCTGTCT ATTCATTGGG TACTGATTAT 001440 001441 AATGGTGTTG TGCATTAAGT CATTCTTTAA TTCTTGGCCA CTGTGTTTTA CGATAGTT |
Predicted Small Protein
Name | NONHSAT107271_smProtein_716:922 |
Length | 69 |
Molecular weight | 7828.1471 |
Aromaticity | 0.102941176471 |
Instability index | 64.2176470588 |
Isoelectric point | 8.61395263672 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0258788199965 |
Amino acid sequence | MHRFILCMSCPEQNQLFLQGSLVPFNRKCHLDITAHLLVSVISGPLHWTKLGSRYSFGKE EFTQILPI |
Secondary structure | LLEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLL LLEEELLL |
PRMN | - |
PiMo | - |