NONHSAT107273
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107273 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1360 nt |
Genomic location |
chr6+:4043970..4046384 |
Exon number |
2 |
Exons |
4043970..4044158,4045214..4046384 |
Genome context |
|
Sequence |
000001 CAGCAACTCT TAGCCATGAA TGTATTTGGA TAGCATCCAA TTTTATGAAA GTATTATCTT CTGTATTGTT ATTACAGAAA 000080
000081 TATAAATACC TTGCTGAAGA TAGCAACATG TCTGTGCCAT CTGAACCAAG CAGCCCCCAG AGCAGTACGA GAACACGATC 000160 000161 ACCATCTCCA GATGACATTC TGGAGCGAGA GCCTCCCAAG TAGCTGGGAC TACAGGCGCC TGCCACCACG CCTGGCTAAT 000240 000241 TTTTGTATTT TTAGTAGAGA TGGGGTTTCA CCGTGTTAGC CAGGATGGTC TCGATCTCCT GACCTCGTGA TCTGCCTGTC 000320 000321 GGCCTCCCAA AGTGCTGGGA TTACAGGCGT GAGCCACCAC GCCCAGCTGA CAGTACACTG TTGAACGGAC ATGGCTGTGT 000400 000401 TCCAGAAAAA ACTTTGGCAC TGAAATTTGA ATTTCATCTA ATTTTCACTT GCCACAAAGT ATTCTGTTCC CCCACCCCCG 000480 000481 AACACTTACA AATGTAAAAG TAGGCCATAC AGAAAGAAGC AGCCAGCTAG ATTTGGCTCA CAGTCTGTAT ATAGTTTACC 000560 000561 GACTCCTGCT CTAGCAAGAT GCACAGGTTT ATCTTGTGCA TGTCCTGCCC AGAGCAGAAT CAGCTATTTC TCCAAGGATC 000640 000641 CCTGGTTCCA TTTAATAGGA AATGCCATTT AGACATCACA GCACACTTAC TAGTGTCTGT AATTTCTGGG CCTTTGCACT 000720 000721 GGACAAAGTT AGGAAGTAGA TACTCTTTTG GAAAGGAGGA GTTTACACAG ATATTGCCAA TTTAAAATTG AGATTATTGG 000800 000801 GGTTTATTAA CTTATGATTT TATATTTCTA TCTCTTATTA CAGTGAAAAA TTTAGTTCTT AACATGATTA CAGATAGGTT 000880 000881 ATCTTGAAAC TTATACACAT TAGATATCAG TATGATTATC ATTACTACAT ATACTAACTG TGGCTTAAAA TTTCAGTGGT 000960 000961 TGTTTTTAGG ATACATTCTA AGTTGTATAG GCACAATTCT CTGTCTTTTA AAATCATTTG AAATCTCTGT ATGGTATGCC 001040 001041 ACAAATTTGA TAGGCTTAGG TTTATTTTCA TTTGCTTTTG TTTTTTAGGA ATCATCTTTT TTTCTTAATA ATACATTCTT 001120 001121 TCATGTATGC ATGTATGTGT GTATATGTTG TATCCTACCT ACACACACAA AACCAAACTA TACATACTTA GATCGATATA 001200 001201 CTTTTCCTCA CTCCTTTTTA TAGGCTCCGC CATAGTTTAT TCAGTCAGAC TTTGATATTT GAATTGTGTC CAGTTTCTGT 001280 001281 CTATTCATTG GGTACTGATT ATAATGGTGT TGTGCATTAA GTCATTCTTT AATTCTTGGC CACTGTGTTT TACGATAGTT 001360 |
Predicted Small Protein
Name | NONHSAT107273_smProtein_578:784 |
Length | 69 |
Molecular weight | 7828.1471 |
Aromaticity | 0.102941176471 |
Instability index | 64.2176470588 |
Isoelectric point | 8.61395263672 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0258788199965 |
Amino acid sequence | MHRFILCMSCPEQNQLFLQGSLVPFNRKCHLDITAHLLVSVISGPLHWTKLGSRYSFGKE EFTQILPI |
Secondary structure | LLEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLL LLEEELLL |
PRMN | - |
PiMo | - |