NONHSAT107350
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107350 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3690 nt |
Genomic location |
chr6+:4198787..4208376 |
Exon number |
2 |
Exons |
4198787..4199637,4205538..4208376 |
Genome context |
|
Sequence |
000001 ATGTGCACAG CGTGCAGGTT TGTTACATAT GTATACATGT GCCATGTTGG TGTGCTGCAC CCATTAACTC GTCATTTAGC 000080
000081 ATTAGGTATA TCTCCTAATG CTATCCCTCC CCCCTCCCCC CACCCCACAA CAGTCCCCGG TGTGTGATGT TCCCCTTCCT 000160 000161 GTGTCCATGT GTTCTCATGG TTCAATTCCC ACCCATGAGT GAGAACATGC GGTGTGTGTT TTTTTGTCCT TGTGATAGTT 000240 000241 TGCTGAGAAT GATGGTTTCC AGTTTCATCC ATGTCCCTAC AAAGGACATG AACTCATCAT TTTTTTTGGC TGCATAGTAT 000320 000321 TTCATGGTGT ATATGTGCCA CATATTTTTA ATCCAGTCTA TCATTGCTGG ACATTTGGGT TGGTTCCAAG TCTTTGCTAT 000400 000401 TGTGAACAGT GCCGCAATAA ATATACGTGT GCAGGTGTCT TTATAGCAGC ATGATTTATA ATCCTTTGGG TATATACCCA 000480 000481 GTAATGGGAT GGCTGGGTCA AATGGTATTT CTAGTTCCAG ATCCCTGAGG AATCGCCACA CTGACTTCCA TAATGGTGGA 000560 000561 ACTAGTTGAC AGTCCCACCA ACAGTGTTAA AGTGTTCCTA TTTCTCCACA TCCTCTCCAG CACTTGTTGT TCCCTGACTT 000640 000641 TTTAATGATC GCCATTCTAA CTGGTGTGAG ATGGTATCTC ATTGTGGTTT TGATTTGCAT TTCTCTGATG GCCAGTGATG 000720 000721 TTGAGCATTT TTTCATGTGT TTTTTGGCTG CATAAATGTC TTCTTTTGAG AAGTGTCTGT TCATATCCTT TGCCCACTTT 000800 000801 TTGATGGGGT TGTTTGTTTT TTTCTTGTAA ATTTGTTTGA GTTCATTGTA GTGCCTTTGA GGCACTCAGC AATTTTTTTT 000880 000881 TAATGTCCCC AGGCTGGAGT GTAGTGGTGT AGTCATAGCT CACTGCCACC TCAAACTCCC AAGCTCAAGC AATCCTCCTG 000960 000961 TCTCAGCCTC CCAAATAGCT GAGACTACTG GCACATGCTA CCATGCCTGG CTAATTTTTA AATTTTTTGT AGAAGTGGGG 001040 001041 TCTCATTCTG TTGCCCAGGC TGCTCTCAAA CTCCCGACGT TAAACAATCT TCCCACCTCA GTCTCTCAAA GTGCTGGGAT 001120 001121 TACATGCATG AGCCACCATG CCTGGCCTGA GGCATTCAGC TTTTTAAAGT CATTGAAGTC ATTCAGCTTT CTAAAGTGTC 001200 001201 ACATAGCAGG TTGACATAAG AACAGACCTC CAAAACCCTC CAGTGATCCT GAACGTTGTC TCCTGCTGTG TGCTGTCACA 001280 001281 TCTTAGCCTT AGCATTCTGC CCTTGTTTTG ATTCTCCTGG CTCCTGCCCC TAGATTCATG TCACCTGGTC CTTTACCCTC 001360 001361 ACACTCAGCA CAGCATCATT TTCCTCCTGT GACTTTAGAC CTGCTTCACT TGAGATAATG TGGATTTTCC TTCATGCTGT 001440 001441 GGTCTTTAGC TCCTTGCTTA ACTATCACAC AAGCAGGTCC ATCATGAAAA AAATGAAACA AAACTGGAGA AGGAAAAGAG 001520 001521 TGCAGACAAT CGGTTGTTAT TTACATGGTG CCCCTTAGGG TCCTTCTTGG GTTTTATTGC ACCTTGCAGA AAAAGTTGTG 001600 001601 CTTCTACTGT AGCAAACTGA GGTACTATGC ATTGATTTCA CAGTCTACTT AGTTGATTTC ATAATTAGTT AATTTCATGT 001680 001681 ATTTTTCTAC TTTTCTATCA GTCTGAAAAG TTATATGTTC CTTTCATCTT CCACTCCTTT ACCTCACTGA AACAATATGG 001760 001761 CCTAGAACTT TCTGATCAGT CATTCTTCAG ATCAGAGCAT GGGGGAGCAA TGTGGGTGAT AAACACTCGG TAGTCGCTCA 001840 001841 GGTAATTATC TCTAGTTCCT TTGGAGGGAT TAAAAATTCA TTTCAGAGCT TCCTGTATAT TTCTTATAAT CATATTGAAT 001920 001921 GAATATAATT CTTATGACAG TTGTAAGTGT AATCATTGTC AACTAATACT TTTATTGTCT ACTTAAAGTC TTGAGTTTTT 002000 002001 TTTTAATTGC TATGATAATT ATTATATGTA ATGTCTGGAT CCTACAGACC CTACCTCAAC AATTATAATT AAAAATGCTA 002080 002081 AAGTCTCGAG TAAGCAAAAC CAGGAAAATA GCCTTCACGT AGATTTCGTA TCTTAGTACT TTGTATTTCT GTCTGTCTGA 002160 002161 GAGAACTACA CATTACTAAA ATAGAGGTAA AAAATATAAA AAAAGAAGTG ACCATACAAT TACAGAAGGT GGTATTAATA 002240 002241 TCAGGGAGGA GGCCTGATAC AGTGAAGGCC AGAAAAATTA AAGGTCAAGA AGAACCATCT AATATATCAT TTGGTCGAGT 002320 002321 TTTGAGCATA ATGGAAATGG CTTATCCTTT AAGAACTCTG ATTCTGTCCG ATTTTTGCTT TCAGTTGTTT CTGAGCTCTA 002400 002401 CCATGTGCTC TTCCTCTGCC CTGAGTGTAG CTTAGTTAGG CTACAGAGAG TGTAGAATAA GCTGTGACTG CAAACTATGT 002480 002481 GGTAAATCTT TGACAGAATC AGTCTTAAGC TTTTCTGTTA ACTGTTTTTT ATAGGTGGTT ATGTTGTTGT TAATCTGCAA 002560 002561 TAAACATTAT TCTTGACATA GACATATGGG TTTTGCTTAT TTTATATATG TGTGCAAAGT TAACTTCAGT TTCATCCTCC 002640 002641 CTCCTTTCCT CCCTCCCTTC CCCCTCCCCT CCCTCCCTCC CTTCCTCCCT CCCTCCCTTC CTCCCTCCCT TCCTACCTTC 002720 002721 GTCCTTCCTT CCTTCCTTCC TTCCTCTCTT CCTTCCTTCT CCCATTCTTC TTATTTTTTC TCTTCTGCAC ATTTTGCTGG 002800 002801 AGAATCTGTT CATGTACCCT GCTTTCCCAC AGTTGCTTTC AGACTTTTTT TTTTTTGAGA CAGCGTCTCT CTCTTTCTCT 002880 002881 CTCTGTTACC CAGACTCAAG TGCAGTGATA CTGTCTCAGC TCACTACAGC CTCAACCTCC TAAGCTCAAG TGATCCTCCT 002960 002961 ACTTCAGCCT CCCAAGTAGC TGAGACTACA TGCACATACC ACCACACCTG GCTAATTTTT AAATTTTTTG TAGAGATGAG 003040 003041 GTCTCACTAT ACTGCCTCAG CTGGTCTCGA ACTCCTGGGC TCAAGGGATC CTCCTGCCTC TGCCTCACAG TTGTGAGCCA 003120 003121 CTGTGCCTGG CCATTTTCAG ACTTTAGAAA ATGATTTTCA TTTACTTTTT CCTGGGAAGG CTCTTGGGTA CAATGTTATG 003200 003201 TGTTATTTAA ATCTAAACAG CAAACTGGCC AGCATTGCCC CTTAGAGTTT CCTCTATGGG GAGGTCATGG ATCCCCTACT 003280 003281 TGAACTCCTC TGTAGCAGGC ACAGCAGCGA GTGCCTAAGG GTGCAGAGCT GGGGGCCCCA TGGCTTTCCT AGCTCCCTTT 003360 003361 CTTGTTCCTA GTGTTTTAAA TTACACTTTT ATTCCAAGGA AGGGCCCTGA TTCCAACCAC ATGAAGTAAC TATATTGGAA 003440 003441 AGCCCTGTGG ACTCCAAAGC ACTGTAATTA AAGAGCAAGG GATTCCTTTT CAGATAATTG AAAGGTGGTG GCAGAGACCC 003520 003521 AGGAGTTAAA TACTTTTAGG CCATGTTTGC ATGTAGATTT TCCTCTTTAA ACCTGTGCTT TTTGCCTGTG AACACTATTT 003600 003601 TCCTGGACAT CCAACAGCAA TTTTTGTAAG AGTTTGAAAC AGTAGGTTTG CCTTCACCTG AGCACCTCTG CAGGCCATTG 003680 003681 ACAGATCCCA |
Predicted Small Protein
Name | NONHSAT107350_smProtein_2585:2857 |
Length | 91 |
Molecular weight | 10066.7502 |
Aromaticity | 0.233333333333 |
Instability index | 73.3555555556 |
Isoelectric point | 7.85540771484 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0480548421725 |
Amino acid sequence | MGFAYFIYVCKVNFSFILPPFLPPFPLPSLPPFLPPSLPPSLPTFVLPSFLPSSLPSFSH SSYFFSSAHFAGESVHVPCFPTVAFRLFFF |
Secondary structure | LLEEEEEEEEEELEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLL LHHHHHHHHHLLLLEELLLLLLLEEEEEEL |
PRMN | - |
PiMo | - |