NONHSAT107384
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107384 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3690 nt |
Genomic location |
chr6+:4292681..4302272 |
Exon number |
2 |
Exons |
4292681..4293531,4299434..4302272 |
Genome context |
|
Sequence |
000001 GCTGTAATAT AAAGGAGAAA TAAAAAAAGA GGAATCTATA ATGAAACGTT TCAACATGGG AATGCACAGG CATGCATACA 000080
000081 CGAGGAGATG CCGAGTGTGT GAAGTTTGCC CTGTGTAAAA CCACCATGAA GGTCCCAGCC AGGAAAGTTG ACCCTTCAAA 000160 000161 CGTGTGTGTT GGGAGCTCAG ATCTCAGGAT CCCGCTGAGT GGCAATTGCG GATGGGATTT TCCAACAAAG CAAGGTACAA 000240 000241 TCCTCCCTTA ATACCCCTCA ACATACCTGA GAAACATCGT GTATGTTAAA AACATGCAAA AATCAGTCGT GTCTAAATTA 000320 000321 AAATGAAGTT TATGCCTTGG CTCAGATTAT TTTAAGCAGG AATTTTCAAC TACATGAATG TCTGATGTGA TATTTCAAAA 000400 000401 TTATGTGGGA TAATCGTCAA TGGAGGGACT GACTTCCCTG GGACCTCACC CACTAAATGC CAGGAACCCC TCAACCAGAA 000480 000481 AAGCCCCCAC ACATTTCCCG TCCACCCTTG ATAGGGGGCA GAATGGCCTC TGAGAACCAG TGACCACTGA CATGTGTTTA 000560 000561 CTGACTGGGA AAGAAGTCTA CGATACGTAT TGTGAAGTAC GACGTATGGT TAAGTAAATG TAGGCTTAAG GATCAACACC 000640 000641 TACAACATGA TTCCATTTTT GAAAAAGGAC AAACATAAAG ACGGCATGAA AGAAAAATCT GTGTATGTGT GCAGGTCCAG 000720 000721 AGAGGAAAAC ATCTGAACAT ATGTAAACAA ACATTAACCA TAAGTGTCTC TGGTGAGTGA GATTACAGGT CATTTTCATT 000800 000801 TTTTAATGTC TATTTTTCCA TATGGACTTT TTTTTTTGTA ATGATATATT ACCAGGGTAG GCACCCAAAC TGCTCCTCTA 000880 000881 CACAAATGCT TGTCCTCTTT TTCAAAGTGT GAGATTTGGC CCAGCTATTC GGACCTACTT AATTTTAAAA ACTCAGTCTT 000960 000961 TCTGTCAGCA AGGGCCTTGG AAGGAAAAGA TCCAGATTCG AGTCCTGATT CTGCCACTGA CTGTGTAACT GTACTGTAGA 001040 001041 GCATTTAAAT GATACTAAAC TCAACAGAAA AATACAAAAG CCCTTATATA TGTGTACTGT TATGCAATAG AAAGAGCAAG 001120 001121 AACATTTTTT CTTGTTACAT TTGAGGCTTG CATTCAAGGC CATTCATGCA CCGCCTAAAG ATGAAGAAGC AGTCATTTTC 001200 001201 TGTTCTGCCT GAACTCTGGA TGTCAATTGA TTGTGGTTAA TTTTAGGTGT CGACTGAACT GAGGGATGCC TGGATGGCTG 001280 001281 GTGAAGCATT GTTTCTGGGT GTGTCTGTGA GGGTGTTTCC AGAGGAGATT GATGCATGAG TCAGTGACCG AGAGAGGAAG 001360 001361 ACCTGCCCTC AGTGTGGACG GGCACCATGC AATCTGCTGG CAACACAGCT AGAACAAAGC AACCAGGAGA AAGGGAAATT 001440 001441 CAGCTTGCTT GGCTTTCTTT TTAATGCTCT CTCTCTTTTC CAGAGCAGTA GGTATATTTT CTCCTGCCCT CCTTGGGCAG 001520 001521 CTGAACTCCA GGTTCTTTGG CCTTTGGACT GTGGGACTTG CACCAGTAGC CTCCTGGGGG ACCTTGCATC TTTAGCCTTG 001600 001601 GACTGGAGGC TACACTGTCA GCTTCTCTGG TGTTGAGGCT TTTGGACTGG ACTGCAGCAT GCTGCTGGCC TCTCTTCCTC 001680 001681 TTCTGCTTGC AGACGGCCTA CCTGGTGGTG GGACTTTCTT TTTGTGATCA TGTGAGCCAA TTCTCCCTAA TAAATTCCCT 001760 001761 TTCGTATATA TGTATCCTAT TGTCTCTGTC CCTCTGAAGA ATCCTGACTA ATACACTATC TTAACCTGAT CTCCCAGGGA 001840 001841 TAAGGATGTT GGGATAGGAC AGAAGAGGTT AGGTCCTTGG GTTGATTTGC ACAGGGCCTT GCACCCAAAA AGGACAGGCT 001920 001921 CATGCGCTTA TTGGGATCTA GCTTATTCCC CTTTTGAAAA CTACAGGCAG AATTCTGGAA CCAGGATGGG CTCCAGCATG 002000 002001 AGCTGTGGTG ACAGGGGACT GCAGAAGCAG GGAATCTAAG CTTCTAAGCA ATGGTCACAT CCCGCCAGAG CATGTCCTCA 002080 002081 TCTAGCTGGA GTTGACACTA CAGTGATGGA CGTTTGCACT TTCCTGTCCT GGGATTTTAA CAAACTAGAA TGTGTCAACA 002160 002161 GGTCTGAACA GATATTGAAG CCAGGTTGTG TAGGATACTT TGGAGAAAAT TTGGCCTGGG GAAGAGACAA CTTCCCCAGT 002240 002241 AAACTGTAGA GAACCTCATG AATAGAACCT GATACACAGT TGTTGAATTG ATTGAGAAGA ATGGAGAGAC AGAAACTCCC 002320 002321 TCTGACCCCA GGCAGTCACT GTGCTGATCA CAGGAGCCCA GGTAAGCCTA GGTCAGACGA TGGTGGGGTA TTTGCAGGCA 002400 002401 CAAGCAGGCA TACCCACCTC AGCCTGTCAT CACTGTAGCC TTTTGAAGCT TCGGGGCACC CAAAGCCCTT CTTGGGAGGG 002480 002481 TTATAACTGT TACCAGCAAG CTGCCAGGAA GAACAACCAA CTGTCGCCCA CACTCTTCAG AAGAGGTGGG ATTTTCTGAG 002560 002561 CTCTGTGCTT CAGTGATGGT GAAGCCCTTC GAGTGACTAT TTCCTCTGTA TTGTTTTTCC AGGCCACTGC ATTTTCTTAT 002640 002641 ACAGAGCTAC TCCACGCATT GCCCTTTGTC CTAGAACATC TTGCCTTAAT TGCATTAATC ATCTGATCTC TTCACTTTTA 002720 002721 ACATGACTTC TTGGGCTCCC ATGATAACAC TGATACCATG TCTGATAAGG TTCAAATTCC ACCACAGCCT GTGGCTGGAG 002800 002801 GGCCTCGTGA GGGAAACTGC TCACAAGAAT AAGGTAGGAG AGTAGGTCCA AGAATAATCC TCCCCCAAAC AGGGAAGGCT 002880 002881 GCGTGACTCA ATGACACCTC CCATCTCTCC TCGTCATAAT GTCCCCCTAG TCCATGTCAG GCCTCATGGG TCATTATGGT 002960 002961 GTTGGGACAG GGTTAGAACT GGTAAGCACT ATTAAAAGGG AGTGTTTTGG GGTTTTTTCC TCCTGTGACC CTGGTTCAGA 003040 003041 AAGCATGTTT TGGAGCAAGT TGGGAGGCAC TCTTGTTTAA ACAGGTGTCA CGGTATCAGT GAAGTCTACC AAGATGTTGT 003120 003121 CAACCTATGT CTTTTTTAAA AGTCACTCTG GGATCTTAAT AAGTGTTTTT AACAAGAAAA TAAAATTTTT AAAAATTGAG 003200 003201 GTCCTGGAAC TGGAAATGTA GGCAAAGGGA CACAATGCGG GTGCCCGGAG TGTTTTGCTT TGGGAGGTAG TGGAGAGAAG 003280 003281 GTGCCAGGGA GAGGCGTGCA TTGACCAAGG TGAGAATACC AATCCCACAA CCTTGGCTCA AGTGCCCCCC GCCCACCAGC 003360 003361 CTCCAGATCC AGTCACCTAG CCGAGAGGGG CAAGGGCTGC ATCTGACCCA GGGATCCTCC ATTCTCAGAA AGAAAGGTGA 003440 003441 GCAATGCTTG GCCTGGATGT GGCATTGAGC TGTTCAGACT TTGCCCTTCA CAGAGTAGCC CCTGCCCACA TTCGCCCATA 003520 003521 TGGGCTTACT CGCTGGTTTC CAGAAGGACT TTAGTCCACT TGTAACCTCA TCTCAACTGA AATAAATCAG CCCCCACCCA 003600 003601 GGGACTGGTT TGCTGTACCA ACTCCACTGG TGATGAAGAG GAGGGGAATC ACAGTGACCT TTGCAGGGTG CATACTGTGC 003680 003681 TTCCAAGAGT |
Predicted Small Protein
Name | NONHSAT107384_smProtein_71:250 |
Length | 60 |
Molecular weight | 6378.3878 |
Aromaticity | 0.0508474576271 |
Instability index | 41.4423728814 |
Isoelectric point | 8.85821533203 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.030157608589 |
Amino acid sequence | MHTRGDAECVKFALCKTTMKVPARKVDPSNVCVGSSDLRIPLSGNCGWDFPTKQGTILP |
Secondary structure | LLLLLHHHHHHHHHHLLLLLLLLLLLLLLLEEEELLLEEEELLLLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |