NONHSAT107384

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107384

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3690 nt

Genomic location

chr6+:4292681..4302272

Exon number

2

Exons

4292681..4293531,4299434..4302272

Genome context

Sequence
000001 GCTGTAATAT AAAGGAGAAA TAAAAAAAGA GGAATCTATA ATGAAACGTT TCAACATGGG AATGCACAGG CATGCATACA 000080
000081 CGAGGAGATG CCGAGTGTGT GAAGTTTGCC CTGTGTAAAA CCACCATGAA GGTCCCAGCC AGGAAAGTTG ACCCTTCAAA 000160
000161 CGTGTGTGTT GGGAGCTCAG ATCTCAGGAT CCCGCTGAGT GGCAATTGCG GATGGGATTT TCCAACAAAG CAAGGTACAA 000240
000241 TCCTCCCTTA ATACCCCTCA ACATACCTGA GAAACATCGT GTATGTTAAA AACATGCAAA AATCAGTCGT GTCTAAATTA 000320
000321 AAATGAAGTT TATGCCTTGG CTCAGATTAT TTTAAGCAGG AATTTTCAAC TACATGAATG TCTGATGTGA TATTTCAAAA 000400
000401 TTATGTGGGA TAATCGTCAA TGGAGGGACT GACTTCCCTG GGACCTCACC CACTAAATGC CAGGAACCCC TCAACCAGAA 000480
000481 AAGCCCCCAC ACATTTCCCG TCCACCCTTG ATAGGGGGCA GAATGGCCTC TGAGAACCAG TGACCACTGA CATGTGTTTA 000560
000561 CTGACTGGGA AAGAAGTCTA CGATACGTAT TGTGAAGTAC GACGTATGGT TAAGTAAATG TAGGCTTAAG GATCAACACC 000640
000641 TACAACATGA TTCCATTTTT GAAAAAGGAC AAACATAAAG ACGGCATGAA AGAAAAATCT GTGTATGTGT GCAGGTCCAG 000720
000721 AGAGGAAAAC ATCTGAACAT ATGTAAACAA ACATTAACCA TAAGTGTCTC TGGTGAGTGA GATTACAGGT CATTTTCATT 000800
000801 TTTTAATGTC TATTTTTCCA TATGGACTTT TTTTTTTGTA ATGATATATT ACCAGGGTAG GCACCCAAAC TGCTCCTCTA 000880
000881 CACAAATGCT TGTCCTCTTT TTCAAAGTGT GAGATTTGGC CCAGCTATTC GGACCTACTT AATTTTAAAA ACTCAGTCTT 000960
000961 TCTGTCAGCA AGGGCCTTGG AAGGAAAAGA TCCAGATTCG AGTCCTGATT CTGCCACTGA CTGTGTAACT GTACTGTAGA 001040
001041 GCATTTAAAT GATACTAAAC TCAACAGAAA AATACAAAAG CCCTTATATA TGTGTACTGT TATGCAATAG AAAGAGCAAG 001120
001121 AACATTTTTT CTTGTTACAT TTGAGGCTTG CATTCAAGGC CATTCATGCA CCGCCTAAAG ATGAAGAAGC AGTCATTTTC 001200
001201 TGTTCTGCCT GAACTCTGGA TGTCAATTGA TTGTGGTTAA TTTTAGGTGT CGACTGAACT GAGGGATGCC TGGATGGCTG 001280
001281 GTGAAGCATT GTTTCTGGGT GTGTCTGTGA GGGTGTTTCC AGAGGAGATT GATGCATGAG TCAGTGACCG AGAGAGGAAG 001360
001361 ACCTGCCCTC AGTGTGGACG GGCACCATGC AATCTGCTGG CAACACAGCT AGAACAAAGC AACCAGGAGA AAGGGAAATT 001440
001441 CAGCTTGCTT GGCTTTCTTT TTAATGCTCT CTCTCTTTTC CAGAGCAGTA GGTATATTTT CTCCTGCCCT CCTTGGGCAG 001520
001521 CTGAACTCCA GGTTCTTTGG CCTTTGGACT GTGGGACTTG CACCAGTAGC CTCCTGGGGG ACCTTGCATC TTTAGCCTTG 001600
001601 GACTGGAGGC TACACTGTCA GCTTCTCTGG TGTTGAGGCT TTTGGACTGG ACTGCAGCAT GCTGCTGGCC TCTCTTCCTC 001680
001681 TTCTGCTTGC AGACGGCCTA CCTGGTGGTG GGACTTTCTT TTTGTGATCA TGTGAGCCAA TTCTCCCTAA TAAATTCCCT 001760
001761 TTCGTATATA TGTATCCTAT TGTCTCTGTC CCTCTGAAGA ATCCTGACTA ATACACTATC TTAACCTGAT CTCCCAGGGA 001840
001841 TAAGGATGTT GGGATAGGAC AGAAGAGGTT AGGTCCTTGG GTTGATTTGC ACAGGGCCTT GCACCCAAAA AGGACAGGCT 001920
001921 CATGCGCTTA TTGGGATCTA GCTTATTCCC CTTTTGAAAA CTACAGGCAG AATTCTGGAA CCAGGATGGG CTCCAGCATG 002000
002001 AGCTGTGGTG ACAGGGGACT GCAGAAGCAG GGAATCTAAG CTTCTAAGCA ATGGTCACAT CCCGCCAGAG CATGTCCTCA 002080
002081 TCTAGCTGGA GTTGACACTA CAGTGATGGA CGTTTGCACT TTCCTGTCCT GGGATTTTAA CAAACTAGAA TGTGTCAACA 002160
002161 GGTCTGAACA GATATTGAAG CCAGGTTGTG TAGGATACTT TGGAGAAAAT TTGGCCTGGG GAAGAGACAA CTTCCCCAGT 002240
002241 AAACTGTAGA GAACCTCATG AATAGAACCT GATACACAGT TGTTGAATTG ATTGAGAAGA ATGGAGAGAC AGAAACTCCC 002320
002321 TCTGACCCCA GGCAGTCACT GTGCTGATCA CAGGAGCCCA GGTAAGCCTA GGTCAGACGA TGGTGGGGTA TTTGCAGGCA 002400
002401 CAAGCAGGCA TACCCACCTC AGCCTGTCAT CACTGTAGCC TTTTGAAGCT TCGGGGCACC CAAAGCCCTT CTTGGGAGGG 002480
002481 TTATAACTGT TACCAGCAAG CTGCCAGGAA GAACAACCAA CTGTCGCCCA CACTCTTCAG AAGAGGTGGG ATTTTCTGAG 002560
002561 CTCTGTGCTT CAGTGATGGT GAAGCCCTTC GAGTGACTAT TTCCTCTGTA TTGTTTTTCC AGGCCACTGC ATTTTCTTAT 002640
002641 ACAGAGCTAC TCCACGCATT GCCCTTTGTC CTAGAACATC TTGCCTTAAT TGCATTAATC ATCTGATCTC TTCACTTTTA 002720
002721 ACATGACTTC TTGGGCTCCC ATGATAACAC TGATACCATG TCTGATAAGG TTCAAATTCC ACCACAGCCT GTGGCTGGAG 002800
002801 GGCCTCGTGA GGGAAACTGC TCACAAGAAT AAGGTAGGAG AGTAGGTCCA AGAATAATCC TCCCCCAAAC AGGGAAGGCT 002880
002881 GCGTGACTCA ATGACACCTC CCATCTCTCC TCGTCATAAT GTCCCCCTAG TCCATGTCAG GCCTCATGGG TCATTATGGT 002960
002961 GTTGGGACAG GGTTAGAACT GGTAAGCACT ATTAAAAGGG AGTGTTTTGG GGTTTTTTCC TCCTGTGACC CTGGTTCAGA 003040
003041 AAGCATGTTT TGGAGCAAGT TGGGAGGCAC TCTTGTTTAA ACAGGTGTCA CGGTATCAGT GAAGTCTACC AAGATGTTGT 003120
003121 CAACCTATGT CTTTTTTAAA AGTCACTCTG GGATCTTAAT AAGTGTTTTT AACAAGAAAA TAAAATTTTT AAAAATTGAG 003200
003201 GTCCTGGAAC TGGAAATGTA GGCAAAGGGA CACAATGCGG GTGCCCGGAG TGTTTTGCTT TGGGAGGTAG TGGAGAGAAG 003280
003281 GTGCCAGGGA GAGGCGTGCA TTGACCAAGG TGAGAATACC AATCCCACAA CCTTGGCTCA AGTGCCCCCC GCCCACCAGC 003360
003361 CTCCAGATCC AGTCACCTAG CCGAGAGGGG CAAGGGCTGC ATCTGACCCA GGGATCCTCC ATTCTCAGAA AGAAAGGTGA 003440
003441 GCAATGCTTG GCCTGGATGT GGCATTGAGC TGTTCAGACT TTGCCCTTCA CAGAGTAGCC CCTGCCCACA TTCGCCCATA 003520
003521 TGGGCTTACT CGCTGGTTTC CAGAAGGACT TTAGTCCACT TGTAACCTCA TCTCAACTGA AATAAATCAG CCCCCACCCA 003600
003601 GGGACTGGTT TGCTGTACCA ACTCCACTGG TGATGAAGAG GAGGGGAATC ACAGTGACCT TTGCAGGGTG CATACTGTGC 003680
003681 TTCCAAGAGT
[back to top]

Predicted Small Protein

Name NONHSAT107384_smProtein_71:250
Length 60
Molecular weight 6378.3878
Aromaticity 0.0508474576271
Instability index 41.4423728814
Isoelectric point 8.85821533203
Runs 9
Runs residual 0.0080858342404
Runs probability 0.030157608589
Amino acid sequence MHTRGDAECVKFALCKTTMKVPARKVDPSNVCVGSSDLRIPLSGNCGWDFPTKQGTILP
Secondary structure LLLLLHHHHHHHHHHLLLLLLLLLLLLLLLEEEELLLEEEELLLLLLLLLLLLLLEELL
PRMN -
PiMo -