NONHSAT107419

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT107419

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4899 nt

Genomic location

chr6+:4395892..4406503

Exon number

14

Exons

4395892..4396201,4396599..4397931,4399466..4399769,4400025..4400116,4400384..4400521,4401030..4401168,4401250..4401464,4401562..4401936,4402442..4402570,4402757..4403005,4403126..4403388,4404826..4405130,4405340..4405462,4405580..4406503

Genome context

Sequence
000001 TTCTATTGAA TAACAGGGAA ATATCTTCAT AGCTCTTGGG GTAGACAAAT ATTTCTCTAG CAGGACATGC AAAGAACAGT 000080
000081 GACCATAAAG GAAAGTGATA ATTTGAACTA TGTTAAAATT AAGAACTTCT GATGAACAAA AGGCACCACT GGGGAGAGAT 000160
000161 TGAAAAAGCA AGCCACAGGA TGGGAGAAGA CATTTGTGAT ACATATATCC AACAAAAGTT CTGTTGAATA TATAAAGAAC 000240
000241 TCCTGTGGAA TATATATATA TATATTCATT CCTTATATAT TCTGTTGAGT ATATAAAGAA CTCCTAGAAT ATGCACCAAA 000320
000321 AGAATGTACC TCCAAGAAAG CTCAGAGAAG CATTCATGGA GCAAATAATA AATATAATTA TATTCACTAT AATTATCTAA 000400
000401 ACATTATAAA TATAAATATT ATATTGTTTT CATTATCACC CCAAAATGAA AACAAACTCC ATGCATTCAT CAACAATAGA 000480
000481 ATGGATAAAT AAACTGTAAT ATATTCATGT AATGGAATAC TACACTGTGA TGAAAAGGAA CAAACTACTG TTACTATGAC 000560
000561 ACGGGGGGAT CTCTCAAACG TGACATTGGA CAAAAGAGAC CAGGCACAGA ATAGTACACA TACAATTCCA TTTATATGAA 000640
000641 GTTCAAAAAC AGGTAAAACT TACTCCTATG GTGCTAGAAA TAAGGATCAT AGTGTCATTT TGGGGATGGG TGGGGGTGAA 000720
000721 TTGGAGGGGC GCATGCAGGG TTCTTGGGGT ACTGATAATA TTCTGTCTTC TAATCTGGGA TGGATTACAC AGGAATGTTT 000800
000801 GCTTTGTGAA AATTCACTGA GCTGTGTGTT TAGTATTTGT GTACTTTTCT ATAGTATATA CCTCAATTAA AAATCTGTCT 000880
000881 AAAATTGGTG CACGACAATG TGAATGTACT TAACACTATT GAACTATATT CTTAAAACTG TTAAAATGAT CAATTGTATG 000960
000961 TTACATGTAT TTTATCAAAA CTATAAAAAG ATTTTTAAAA GAATGAACCA ACTTCACTGA TACCTTGATT TGACTTCTGG 001040
001041 CCTCCAGGGT CATGCGATGC AGCCATATTT ACTTCCAGTG AGTTCCCAAA TCAGTATTTT TTAGGCTCAA CTTAGTTTCT 001120
001121 TATGTATGTA ACATCTGCCA CCAAAAGTAA ATATTTTCTA ACTGGAAAAA AATAAATTTA AATAAAGGAG TTTCCCTGCA 001200
001201 TACTCTAGTG CTAATAGGAA AAAATACGGC AGTCCATCAG AGCTCACCAA GCTCGGTGAT TGGATCAACT CTGCCAGAGT 001280
001281 GTGAAATCAA GCAAGTAGAC TTAAAATCTC AGCTTCTCCC TCCCTCTGTG CCGACAGGCC CCTGGAGGGA AGTTCAGCTG 001360
001361 GACGAAGTTC ACAGGCCTGG GGATGCCTAC TGAGACAAAG CCCTTGCCAG CTGTTGTTTT CCTCACCCTC ATAGTGTAGG 001440
001441 AACTGAAGCC AGGGCTGACC TCAGCAGCTG TCCCCACAGA TCATGTCTAG AGCACACTAA AGGGTTGGAC CAACCCCAGA 001520
001521 TCACAGACAG CTCCACAAGG TCACAGTTCC AGCCCTGCAA CTGACCTCAC CAGCAGCATT GTTTAGAGCA CTCAGCATTG 001600
001601 TTTGCAAGAA GTTTGTCTAA AGTTTGTCGT GTAACCGTGC TCACACTGAA GTCATGATCT GCCGGCCCTG AGCCTCTGCA 001680
001681 TCTCAGTTTC TTCGCATGGA AAACAGGACT AACAACACTC AGTCCCCACT GCTGTCATGA GGATGGAACA CTCAAGGAGA 001760
001761 ACTGCACAGT GTGGCTCAGC CTCACGCTTT GTTTGCTTAT CAGTTTTGAT TCTGCAGGGC TCTTCAGGAC CACAGCCCTG 001840
001841 TCCCTTCTTC CAGTCTGTAT CAGCATCTGA TCTCTCAGGG TGGGTCTAGG TCTTCTTTAA TAAATCCATC CAGCTGAGCT 001920
001921 TTCCATCCAC GAGCAAGAAG GGACGCTCAC CAGACACTGG CAAGCACTGA GTTTGTCCCC GGCCCATGTC ACCTTCACCA 002000
002001 TCCTTTATCT TGTAGGAACA CATTGAGAGC CAGAGTCTGA AGGAATGTGC TGCTCAAAGA GCTGAAGACA GAACTCATTT 002080
002081 GAAGCTTGCA AATGCCTTAG TCTTTAAAGA ATTCACTAGA GCCAATGCAA GGCTGTCCCT ATCCAGCCTG TGTGCTCCAT 002160
002161 CCTGGTCTCA TGAGTAGGAA AGGAGCTAGT CACAGATCCT GGAGCTCTGG GGAATTTCTT CTAGATACAG AGCTTTGGGG 002240
002241 AGCAGGCTAG AGGAAGCCAC TGAGGCCCAC ACGCAGCCTC TGCTCCTGGG AGAGCCCTGA AGGGCCATGA GATGCACCAC 002320
002321 ATCAGGGCAG TCCCCATCCT CAGAGAAGGC TACACAACTT GACAGTTTCT GTGCCTGGGT CTGTGCTAGC CCTTTAGCCT 002400
002401 GGGGTGCCAC CCACTCCACC TTCCAATGAT TAAACCCCTC TTTCCCTTCA AGGTACTGTA AATGCTCCTT TTGTGATGCC 002480
002481 CCTGGAGCTT CTCCCATTGC AGTCCTATAC CATGTTACTT GCATGTTGCT GCATTTACGA ATTGCCTGGA GCACAGAAGT 002560
002561 CACGGTACCA GTTGTTTTGC ATAAGAATTC CATTTAATCC TCATTGCTCG CTTCATTAGG CAGGTATTGA TATACCCATT 002640
002641 TTACAGAAGA GCTTCACCAA GTAAAGGCAG AGGGCTAGAA TTAAGATTTA AACTTGAGTC TGACTCCAAA GCCCATGCTC 002720
002721 TTGCAATGAC CATGTTATGA ATCTTATATT AATCTTTGTT TGGTCTTATG ATCTGGCACG GTGCCTTGTA CGTAAGCAAT 002800
002801 TCTCAATAAA TGTTTGCAGA GTGCAATGTG TCATCTCAGA GTGTTGAAGG AAAGCAAACC AGCGTCTCAA GTAATTTAGA 002880
002881 CTTTGGCATA ACTTTCTGAA AGGGACACGC CTGCCAGCTG CCGCCGACCA CCCCGCCGAC CCTGTTTCTG TATGTCATAT 002960
002961 GGTGGCTGGG AGCCACGGGC CCTCTCCAAG TCCATCCACT TAGGATTTCC TCCTCCGTCA AACTCAGAGG CTTTGGCCAT 003040
003041 TCCTGATGTT TACTCATTCA CTGCCAATCC CACACGCCTC TATGCTGCTC TCTTCCACAA GCATTTGGCT CTTCATTTCA 003120
003121 GAATTTCCGC TGAGTCATAG CTGGAGCAGG CAGTGAGGGT GTCCCTTCAG CTCTCTAAAT TTACCTCCCT GAGCTTGATT 003200
003201 TCCCATAGTG GCCAGTTGAC CTTGACCAGA TTGACTTCAG AGAAGCCAGC TGTAATTAAG CAGAGGCAGA AATCTCCAAG 003280
003281 GAGGCAGCCG CATGGAGGCG TGACATGTGA CCATGACTTT CGGCTGGAGG TGGGGGTCAT GTGCACGTGG CCTGGGGCTT 003360
003361 AGCTCTCACC CTGCTACTCA CTCAGAATTC TCCTCTGGGT TTGGAGGTCT GTGAGCAAGA TGAAAAAACA CAGAATTCTG 003440
003441 TTATTCTGTT CCTCGTAGTG TAAGCATTCT TTTTCTTGGG TTCTTTTTTA GGAACAGAAC AAAATTAAAA GTAAAGGGAG 003520
003521 CCAAAAGCAG CAACACCCAG GGCTGAAAGT ATTGAAAAGG CCCATGGGCA GCCAGCCAGC AAAAAGAAGA AGCTGAAACA 003600
003601 TCCCACAGCA GGGAATTGCT ATGTATGTAA GCCCCATTTC AAGAACAACT AATACAGAAA AATCCAAATC TTAAAACCTA 003680
003681 CAAATTAGTG CACGAGTACT ACAACTGATG TGCCTTACAA ACAGATTTTT ACTTAATAAA CAGACTCTGT GAGATCTTTG 003760
003761 GCCAATGGTT ATTCCTTTGT ATGGCTTCTT GAAATTCCCT GAGAAATTAA AGAAAGTGAT GGACCCCTTT TCCAGAAAAT 003840
003841 TGTATTCACA CATGAGACCC CATCTCAAAA AATCAATTAT TTATTAATTA AGAAAAGAAA TGTAATTCCT TTCTTCTATT 003920
003921 AGATTACGAC CTATAAGAAA GAATAGTAAA CACTACAAAT CTGACTGTAT TATGGACACT CTAGGTGGAG CCAAGATAGC 004000
004001 CGACTAGAAA CAGCGGCAAT CAAAGGCTCC TATGAAAAAG AACCATAATT GGTGCGTAAA TCCTTCATGG GCAACCAAGC 004080
004081 TACCCAGGTT CTCTCATCAG GACTGACTTA GGCACCTGAT GTGATCCATG ATAAGGAAGG AAGAGCAGTG GAGTGTGGCA 004160
004161 GCCACCTAAG AGCCACACGG GGCAGGGGAG TTCCACCCCC AGCAAAGGGA GGCGGTGAGT GAGCGTGCTA CCCAGCCGGG 004240
004241 GAAACCGTGC TTTTTACACA GAACTGTGCA ACCTACGGAT TGGAAGATCC CACTGGCAAA CCCATGCCAC CGGGGCCTAG 004320
004321 GGTCCCAAAC TTGGAGCCGC GCACATTCTC AACAGCCCCT CACTGGAATC TGCTTAAGCC TGCCAAGCTT CCGGGGGGAG 004400
004401 GGGTGACCAA CACCACAGCT GCAGCTGCCT GCTGCCTAAG CCATTTGAGC TCCTTGGGGT AGAGGCAGCA GCCAGCACTG 004480
004481 GGACTCATAA CTGCCTAACA CACTAAGCTC CCTGAGCGGG GGAAGGGCAG AAGCCATTTC TATAGTCAGG CCGCACTTTT 004560
004561 CTCCTGCTGG AGTCAGGGAG GCACCACGGC TTGGTCCCCA AGAGGTGTCC CCCACAGCCC AACATACCAG CTGTGGCAGA 004640
004641 CTGTGGCCAG AGCGCCTCTT CAGGCCTGAC ACTGACACAT CCTTCCTCAC TGGGCAGGGC TTCCCTGCAG GAACTCCAAC 004720
004721 AACTGCAGCC AGAGGCTCAG GGACAGAACC GAGATCTCCC TGGGCCTGAG CCCCTAATGG GAGGGGTGGC CGCACCTCCA 004800
004801 TTACCAGGAG GAAAGGAAGA TTTAGCCTTT CCTCCTGGTA GTTCTGAGGA ATCTGGACAG CCCAGATGAA TGGGTTTCCC 004880
004881 CAAAGCGAAG CACACTCCC
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Predicted Small Protein

Name NONHSAT107419_smProtein_2951:3139
Length 63
Molecular weight 6869.731
Aromaticity 0.129032258065
Instability index 44.6612903226
Isoelectric point 8.21502685547
Runs 11
Runs residual 0.0237788018433
Runs probability 0.013336866278
Amino acid sequence MSYGGWEPRALSKSIHLGFPPPSNSEALAIPDVYSFTANPTRLYAALFHKHLALHFRISA
ES
Secondary structure LLLLLLLLHHHLLLEELLLLLLLLLLLLLLLLHHHLLLLHHHHHHHHHHHHHHHLEEEEL
LL
PRMN -
PiMo -