NONHSAT107451
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107451 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3156 nt |
Genomic location |
chr6-:4540757..4548502 |
Exon number |
17 |
Exons |
4540757..4541416,4541533..4541647,4542119..4542409,4542516..4542627,4542707..4542802,4542898..4543019,4543137..4543169,4543791..4543865,4544080..4544148,4544230..4544314,4544422..4544525,4544611..4544862,4545131..4545428,4545517..4545567,4545701..4545879,4546135..4546218,4547973..4548502 |
Genome context |
|
Sequence |
000001 CAAACTCCTC ATTCCTCCCT ACCCCTAACT CCTGACAACC AATATTCTGC TTTCTGTCTC TATGAATTTG CCTATTGTAG 000080
000081 GTACCTCATA TAAGTGGAAT CATACAGTAT TGTCCTTTTG CATCTGGCTT ATTTCACTTA GCCTAAGGTA CTCATGGTTC 000160 000161 ATCCATGTTG TAGCATGTGT CAGAATTTCC TTCCTTTTTA AGGCTGACTT ATGGGCATAC ATCATTTTGC TAACCCATTC 000240 000241 ATCTGTTGAT AGACACATGG TTTTCTTCTA TGTTTTAGCT ATTGGGAATA ATGCTGCCAT AAATTTGGGT GTACTATTTC 000320 000321 TTTGAGACCC TGCTTTCAGT TCTTTTGGGT GTATACTCAG AAGTGGAATT ACTGGATCAT ATGGTAATTC TATAATTTTT 000400 000401 TTTCTGAGAA CCTGCCATAC TACTTCCCAC AGTGGCAGCA CTGTTTTACG TTGCCACCAA CAGTGCACAA GAGTGCCAAC 000480 000481 TTCTCTGCAT CCTTGCCAAC ACTTATTTTC TGTTTTTTGA CAGTAGCCGT TTTCAATGAA TATTTATTTA GCTCTTACTA 000560 000561 TGTGCCAATC ACTGTTCTAC ATGTTTGGGT CACATCAGAG AATGAAGTAG ACTATGGTAT TTAGAAACAA GATCAGGCAC 000640 000641 TAAATGTGCT TGTTGCTTTC TTACTTGTGT GTCTTTTTAG CGGGACAGAT CTTGGAATTA TACATATGTA TACTCCGCCA 000720 000721 TGCAAACACA AACATCAATA TTTATTTAAA AACTGAGTTG GATAATGATA CTTCTGACTC CGGTTCACAC CCCTAACCTA 000800 000801 TGCCCTTGTG AGAAACTAAT TTATTAATTA AAACACAGAA TTTGTTTTAT TCATTTGTAA TATAGTTAAA TTCATTTATT 000880 000881 ACAATTTGTA TTCCATTTTG GGTTTCTCCC ATATTGTGGT TGATTTCTTT TAAGTTTACA CTCAGTAAAA ATCACTCTTT 000960 000961 GTGGTGTACA GTTTTATGGG TTTTGACAAA TGGATAGAGT CGCATATCCA CCCTGCATCA TGACTTAGAA TGGTTCTGCC 001040 001041 ACTCACAAAA TCCACTTCTA TTGCCGGCTT TGTAGTTAAA GCTACCCTCT CCCCACGCCT GGCCTCTGGA GCCCTCTGAT 001120 001121 TTGTTTTCCA TCCATATAGT TTGTGAACCT GTGTTTTCAT TTCTCAAGGG TTAATATATA TTTACCTTTA TTAGATGCAG 001200 001201 CCAAACTACT TTCTAGAGTG GCTTTAACAT TTTCCATTTC TACCAACAAT ATGTGAGAGA TCTGTTTTAT ATCCTCATCA 001280 001281 GTACTTGGTA CTGCTTGTAT TTTTATTTTA ATCATTTTAA TAAGAGTGTA ATACTTCATT GAGTTTCTTT TTGAGATGGG 001360 001361 ATGGTGTTAT GTTGCCCAGG CTTCCTGGGC TCAGTGACTA CTGATGTTGG ACATTTCTTC AAATGCTCAT TTGACACTTT 001440 001441 CTTTGGTGAA GTGCTCTTTA GATCTTGTCC GTTTTCATAT GGGGTTGTTT TATCTTATTT GATGGTGCTT TATGAAAAGC 001520 001521 AAAAGTTTTT AATTTTGATA GAGTCCATTT ATTAATGTTT AATTTATAGG TGGTGTTTTT GGTCCTTTAT ATTTCTGTCT 001600 001601 GTGATACATT TTGAGTTAAT ATTTGTGTAT GAGTTGTGAG ACAAGGGGCT AATACCATGT CCTGATCATT GAAGTTCTGT 001680 001681 AGTTAGTTTT CAAATCAAGC AGGTGTAAAT ACCCTGACTT TTTTCTTTCT GTGGATGGAA ACTTAGGTTG ATTTCATATC 001760 001761 TTTAGATTTA ATTTTTGGGG AAATAGCCAT ACCGTTTTCC ATAATGACTG TAGTAATTTA CATTCCCAAC AATAGTGTGC 001840 001841 AAAGATTCCC ATTTCTCCAC GTCCTCACCA ACATTTATCT TTTCATATAC TTTTTGGCCA TTTGTATGTC TTCTTTTGAG 001920 001921 AAATGGCTAT TTAGGTCTTT TGTCCATCTT TAAAATCAGG TTATTTGTTT TTTAGCTAAG GTTGTCTCTT CACTCTTGAT 002000 002001 TGTTTCCTTT GCTGTGAAGG ATATTTTTTA GTTTGCTGTA ATCCTATTTG TCTATTTTTG CTTTTGTTCC TTGTGCTATT 002080 002081 GGCCTAATTT ATGAATTTAT TTCTGGGCTC TCTATCCTGT TCCATTGGTT CGTGCCTGTT TTTATGCCAA TACTATGATG 002160 002161 TTTTGATTAC TATAGCTTTG TAGTACATTT TAAAGTTGAA CAATATGATG CCTTCAGAAT TATTATTATT TTTTTTCCTC 002240 002241 AAGATTGTTT TGGCTATTCT GGGTCTTTTG TGGCTCCAAA TTTTAGGATT GTTTTTACTA TTTCTGTGAA AAATGTCAAT 002320 002321 GGAATTTTGA TAGGTTTTGC ATTGAATCTA TAGCTCACTT TGAGTAGTAT AAATATTTTA ATGGCATTGT TTTCTTAATC 002400 002401 TCATTTTTGT ATAGTTTGTG GTTAGGATAT AGAGATACAT TTGACTTTTT GATCTTGTAG GCTGCAATCT TGCTAAACTT 002480 002481 TTAGTCCATT TTGCTGTGTT GCTGTGTCAT CCCATGGTGG AAGGTGGAAG GCAACAAGAG CATGTGCAAA AGAACAAGAG 002560 002561 GGTGCTGAAC TCACTTTATA ACAAACCTAC TTTTGAGATA ACCAATCTAC TCCCATGATA ATGACATTAA TCCGTTCATG 002640 002641 AGGGCAGAGC CCTCTTAGTA GGCCCTAACT CCCCATACTG TTGCATTGGG GGTTCAGTTT CCAATACATG AACTTTGGGG 002720 002721 GACACATTCA AACCATAGCA ACTTGCTTTT CAGTTCTAAT TGGCTTTTAT TATTTTTGCA GATTCATTAA GATTTTATAC 002800 002801 ATACAAGATC ATGTCATATA TGAATAAAGT TTTACTTTTT CCTTTCTAAT CTACGTGCCT TTGAATTATT TTTGCCTTAT 002880 002881 TGCACTGACC AGAACCTACA GTAAAATGTG GAATAGAAGA GGTGAGACAA CTTTTTTTCC TGTTCCAGAT CTTATGGGGG 002960 002961 ATAGCATTCA GTCTTTCCTC ATTAAGTATT ATGTTAGCTG TAGGACTTTC CCACAGATGC ATTTATAAGA CTGAGGAAAT 003040 003041 TCTCGGCTGG GTGTGGTGGC TCACGCCTGT AATCCCAGCA CTTTGGGAGG CCGAGGCGGG TGGATCACCC CAGGTCAGGA 003120 003121 GTTCAAGACC AGCCTGGGCA ACATGGTGAA ACCCTG |
Predicted Small Protein
Name | NONHSAT107451_smProtein_2990:3148 |
Length | 53 |
Molecular weight | 5907.7798 |
Aromaticity | 0.134615384615 |
Instability index | 70.6384615385 |
Isoelectric point | 6.52642822266 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0490588627844 |
Amino acid sequence | MLAVGLSHRCIYKTEEILGWVWWLTPVIPALWEAEAGGSPQVRSSRPAWATW |
Secondary structure | LEEELLLLLEELLHHHHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |