NONHSAT107480
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107480 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3156 nt |
Genomic location |
chr6-:4703245..4710990 |
Exon number |
17 |
Exons |
4703245..4703904,4704021..4704135,4704607..4704897,4705004..4705115,4705195..4705290,4705386..4705507,4705625..4705657,4706279..4706353,4706568..4706636,4706718..4706802,4706910..4707013,4707099..4707350,4707619..4707916,4708005..4708055,4708189..4708367,4708623..4708706,4710461..4710990 |
Genome context |
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Sequence |
000001 TAGAATGTGA GTAGGGGAGG GGAGAAGGGA AACATCCAGG TACAAGGAGC AGAGAATAAA GACGGGAGCA CAGCGTGCCT 000080
000081 GTGGGACCTG GATGAGCCTT GGAGCAGAGG CATCTGTTGG AAGAAGTAGC TGAATAGATT GGATGGGCCT GTGAAACGAG 000160 000161 GCCCTAAAAG CCACTGGGTT CCTCCCTCCC TCCCTCCCTG TTTTAGAGGT TTAGAGATAA AACTGGTGAA ATTAAAAGGG 000240 000241 ACCAAAAAAG CAGTGGTTCT CAATCCTGGT GGCACATGAG AAAATTAAGG ATGCTGGACT CATTCTCCAG AAATTCTCAT 000320 000321 GTAATTGGTC TGGAAAGGGG ATCTAAATGT AGTTTCCTTC CTTCCTTCCT TCCTTCCCTC CCTCCCTCCC TCCTTCCCTC 000400 000401 CCTCCCTTTC TCCCTCCCTT CCTCCTTTCT TTCCTTTTAT TCTTCTTTCG ATCCTTCCTC TTTCTCTTTC TGCAGAGCAG 000480 000481 CAATCAAAAT GGAAAAGAAA TGAACATAAA GAGATTTGTT TTGTTTTGTT ATTAAAAATA TATGGCCAGG TGTGGTGGCT 000560 000561 CATAACTGTA ATCCCAGTAC TTTGGGAGGA CAAGGTGGGC AGATCACTTG AGACCAGAAA ACATTCTTTT GATTATACCT 000640 000641 AAAACATCTG CAATAATAGA TCACATATTA GGCCATAAAG GAAGTTTCAG TAAGTTCCAA GGAATCAATC CCATTCTGAC 000720 000721 AATGTTTTCC AACTACAATG CCATCACAGA ATTAATATTT TTTAAAAGAT GGCTAAAATA AAGTCCTGCT TATATTAACA 000800 000801 AAAAAGTTAA AAACAAATGA GGTTTCCTAA TAAGATATTA TCTCATATGA TAAAATGCAC ACATTTTAGA AGTCTGATTT 000880 000881 TTTAAGGTCT TGAATGCCCA GGTAAGGGAT TTGGATGGCT GGAGGTCATA CAATACAGTA AACAGTTTAA CAGACAGCCG 000960 000961 GGGGCTGTGG CTCACGCCTG TAATCCCAGC ACTTTGGGAG GCCGAGGAGG GCAGATCACG AGGTCAAGAG ATCAAGACCA 001040 001041 TCCTGGCCAA CGTGGTGAAA CCCAGTCTCT ATTAAAAATA CAAAAAATTA GTGTGGTGTC ACATGCCTGT AGTCCCAGCT 001120 001121 ACTCAGGAGG CTGAGGCAGG AGCCTCTTCT TGGATATTTG ACTTCATGGA ATGCATCTTT TCCTTAAAAA AACCTGATTG 001200 001201 AGGCCCTTAT TGTAGAAAAC ACCTGGTAGT TGGTGCCTCT GTTTTATCTT CCAACTCTGG TCTCCATCCT GAACACTGTA 001280 001281 ACCAAGTTAG GCTCTGTTCA GCATTGCTTT CACCATTCTG TTCCTTCCAC AAAAGCTTTT GGCGAGTCCC CACTGGCCTG 001360 001361 AGGTGAAAAT CTGAATGCTT TACATTAGAG TTCATGTCTC ACTGTCACCC AGGCTGGAGT GCAGTGGTGC CATCTCGACT 001440 001441 CACTGCAGGC TCTGCCTCCA GGATTCAAGC GATTCTTATT CCTCAGCCTC CAGAGTAAAG CCCGCCTTGG CCTCCCAAAG 001520 001521 TGCTGGGATT ACAGGCCTGA GCCACCATAC CCGGCCTAAT TGTAGTTTTA AAACTCTTAA ATTCCCAGAG CTCTTTGTTC 001600 001601 AAATGGAATC TCTTGTTCAA AAACATTGTA GCTCCATCCA TCAGGCAGAT GACCTCCACT GGGCCTCTCG CCTGACCCTC 001680 001681 CTCTGGTGGT TTGCTCATCA GTCAGGGACC CTGCCTCATA AAAGGCCGTA AAATGAGTGA GTTTTTTAAG GAAGAGAGGA 001760 001761 GAAGAGCTTC TAGGAGGAGG AGGTGGGTGG GTGGCCAATG GGGTGTGATA TGGTTAGGCT TTGTGTCCCT ATCCAAATCT 001840 001841 CATTTTGTCT TTTTTCTTTT TTTTGAGATG GAGTCTCATG CTCTAGGATT ACAGGCACCT GCCACCACAC CCAGCTAATT 001920 001921 TTTGTATTTT CTCTACAGAT GGGGTTTTGC CATGTTGGCC AGGCTGGTCT TGAACTCCCA TTTTGAATTG TAATCCTCAG 002000 002001 ATGTCAAGGG AGAAAAGTAA TTGAATGATG GGAGTAGTTT CCCCCATGCT GTTCACGTGA TAATGAGTGA ATTCTCACGA 002080 002081 GATCTGATGG AGGAAGTTGG CTTCCCAAGA CATGTGGAAT TTAAGCCTCT TTTCTTTATA AATTATCCAG TCTTGGGCAA 002160 002161 TTCTTTATAG CAGTGTGAAA ACGGACTAAT ACAGGGTGAA TGTTATTAAC TACAGTTCCT GGGGAGGATA AAAGGTGAGA 002240 002241 AGCAGTCAGG ACTTTGGAAT TCAGGTCACC TTGCAGTATG TATGATGTGG ATGGGTGGTT TTCATGGGCC TGAGAGCTGA 002320 002321 GTGGGAAGTG AGAAGTCTCC TTTACCTTTC TGGGACTTCA TGGAGATCAT TTCAATCTGA TCAGGATGTT TTTCTAATAA 002400 002401 AAATCACTGG GAACAGGGAT TCCTCTGGGC AAATCCCCCA ACCTCATCCC TTTCAGGGAT TGAGAAATCT CCCAACCATT 002480 002481 TTCCTGATGG CAGCTGATCA GACCAGCTTC TGTACAGATT TGCCTTGATG TCAGCATCAG AGAGGTCATC TTTAGCCACG 002560 002561 ATCAAGTCAT CCAGGGTTAC ATCATCTGCC AGCATCATCC TGCTTGTGTG AATCTGAAAG ATGCACTTCT TAGTCTTTTC 002640 002641 ATCAGGCAGG GGGAACTTGA TCTTCCTGCC AGTGCGGCCT GGTCTGATAA GTGCTGGATC CAAAGTTTCT CTTCAGTTTG 002720 002721 TGGTCATGAT ATCTTTCACA TCTCCCCTAG AATCAAATCC ATCCAACTGG TTCAACAGTT CCAACATTGT TTGCTGAATT 002800 002801 TCTCTCTCAC CACCAGAATT TGAGTCATAT CTTTTTGTCC CAATGGCGTC AGTTTCATCA GTAAACACGA TGGATGGTGC 002880 002881 ATGTTCTCCA GCAACTTGAA ACAATTCCCG TACAAGTTTG GGCCCATCAC CTAGGTACTT CTGAATAAGT TCAGAGCCAA 002960 002961 CCACTTTCAA GAAAGTGGCT GAGGTTTGGT TTGCTACCGC TTTGGCTAGC AAGGTTTTAA CTATGCCAGG TGGACCATAG 003040 003041 AGAATGACCC CCTTAGGAGG CTTTATACCC ATCTCTTCAT AATGTTCAGC ATGGGTGAGA GGAAGCTCCA CAGATTCCTT 003120 003121 AATTTCCTGA ATTTGATTAT CCAACCTCCC AGTATT |
Predicted Small Protein
Name | NONHSAT107480_smProtein_275:502 |
Length | 76 |
Molecular weight | 8437.8124 |
Aromaticity | 0.133333333333 |
Instability index | 68.8094666667 |
Isoelectric point | 10.0338745117 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0576949498519 |
Amino acid sequence | MRKLRMLDSFSRNSHVIGLERGSKCSFLPSFLPSLPPSLLPSLPFSLPSSFLSFYSSFDP SSFSFCRAAIKMEKK |
Secondary structure | LLLLHHHHLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLL LLHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiiiiiii |