NONHSAT107556
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107556 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1837 nt |
Genomic location |
chr6-:6685381..6687217 |
Exon number |
1 |
Exons |
6685381..6687217 |
Genome context |
|
Sequence |
000001 GGCTCCCAGC CGGTAATGGG AGGCCTGGAG GGGGATGGAC TTTAAAAAGG AAGCAGAAAG GCCAGGAGGA CGAGCTTCAC 000080
000081 TGGAGGTGGG TAAGTTTTGT TTCAGACCTG TAGGGCTGAA AGTGTTGACG AACACCTGGG AGAAAATGTC CAGTCACCGT 000160 000161 CACTGCAAAT GCGGGTCCGA CCTTCAGGAG AGGGATTTGG ACTGAAGATG TGGGTAGGAG CACCCTCTCT TAGACAAGAA 000240 000241 AAATTGAGAC TAAGAGGAGA TGAGATCGCT GGGGGATCAT AATTAAGTAA AAACTTGTAT CTCTAAAATC CGTCCTGACA 000320 000321 TTTTCATTTA TAGGATATAC ATATGTATGT ATCTGTTATA ATCTGAAATG TGTCCCTCAA AATTCATATT TGAAGCCCTA 000400 000401 ACCTCCTCAT ACCTCAGACT GGGACTGTAT TTGGAGATGA GGCCTTTAAA AAGATAATTA AGGTAAAACG AAGGCATTAG 000480 000481 AATGGGCTCT AATCCAATAT GTCAGGAGTC CTTATAGGAA GAGGAGATGA GGACACAGAC ACCCACAGAG GGAAGACGGT 000560 000561 GTGAGGACAC AGGGAGAGGA CACCATCTGC AAGCCCAGGA GGGAGGCCTC AGGAGAAACC AATCCCGCCC ACACCTGGAT 000640 000641 GTGGGGCTTC CAGCCCCCAG CACTGCGAGG GAATAAAGCT CCGTTGTGTA AGCTGCCGCA TCTGTGGTAT TTTATTATGG 000720 000721 CAGCCCCAGC TACTAATACA GTACCCCTAC CGATACATAC ATATTTACCC ACATGTAGCC ACACACATGT GCACATATGT 000800 000801 AATCTTTTTG CCTATAAAAA AGTAAGCAAT GCCTAAAAGT ACAGGTGGAG AGAAGGCTAA AAAGCACAGG CTCGAAGAGA 000880 000881 CTGCCAAGAT ACAACGATCC AACAAAGACA CATCGTATCA ACAGTAATGA TTTCCTAAAT GTGAAGGTAA TTTGGATGGC 000960 000961 TGGTTTATAG TTTTCATGCC CGGGAGTTTT CCAAGGCACA ATGTATACCC TTTGCGGCAG CTTACTCTCC TGAAATGTGC 001040 001041 CTTCATGAAA TTAGATAAAC AGGGAGAAGA TATGAAGTAC ATCTGCCTAA CACCACGTTA GAAGAATCCC CGGGCATTTG 001120 001121 CATCTTATGC GATGATATGC TGGCAAACCT TGGCCAACTT CCAGTCTTGT CCTTATGACA GGGGACTGCT GTGTTGAGTT 001200 001201 CCCGTCTCAG GCCTCACATC CACCTTGGCC CTGCCTTGGG AGCCTGTAGG TGTGGGCAGA AAAGAGGGAC GCTGCCTTCC 001280 001281 TGGCTGGGCC TTTCTTCACA CACAGGCACG AGGACCCAAG CTCTAAAGGA TGAAGTCCCC ATGGTCTCCG AAGTTTTCAT 001360 001361 TATCATCCCC CTCCTAAAGC TCCACCTTGG AGGCAATGCA CTGTAACAAA AGGACCAGCA CAGTGCCCAG CACACAGAAA 001440 001441 GCTATCAATC AATGTCAGCC TTAACCATTA TGTTGGTTGA CTTGCCATCC CTCTTCCTCA ACTGCAAACT ATGTGAGAGA 001520 001521 AAGATTCATG TAACCTTGGT ATTACACAAC TCCATCGTGG TGGGTTCAGT TGCATTTGTC AAATGATTCA GAGTAGGACA 001600 001601 ACGGGAATTT TCTTTACAAC ATCACAGCAT TGTAAAGTCT TTGCTTTGCA CGAAAGTGTG GGACTGAAGA AATGATTGTG 001680 001681 CAGGTTGAAA CTGTGAAGCA ATTTTAAGAA GCAACAAGGA AAATTATGAT TGTTTCATAA TCTTCAAAAA ATTTTTAAAG 001760 001761 TGTTAAGAAC TGTTTTACTA CTGGTCGTAA ATGTATAAGA ACATTTAAAG ATAGCAAATT GAATACTTAT TTAGCCT |
Predicted Small Protein
Name | NONHSAT107556_smProtein_638:835 |
Length | 66 |
Molecular weight | 7329.6204 |
Aromaticity | 0.123076923077 |
Instability index | 47.5246153846 |
Isoelectric point | 9.50958251953 |
Runs | 7 |
Runs residual | 0.0425961538462 |
Runs probability | 0.0465339288869 |
Amino acid sequence | MWGFQPPALRGNKAPLCKLPHLWYFIMAAPATNTVPLPIHTYLPTCSHTHVHICNLFAYK KVSNA |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEHHHHHEEE ELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHH HLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTT Tiiii |