NONHSAT107859

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT107859

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5333 nt

Genomic location

chr6-:14790201..15090597

Exon number

14

Exons

14790201..14790329,14861230..14861548,14861853..14862052,14874500..14875285,14876283..14876501,14897165..14897607,14944653..14945314,14976467..14977549,14997647..14997706,15009156..15009315,15022047..15022238,15053131..15053417,15079863..15080064,15090007..15090597

Genome context

Sequence
000001 TTGAAATTGC TCATCAAGTG CAAATAGCTC CCAGCCTGGA TGGCTGAGCT GCTCTCCAGC CTCCTCTCTC TGGAGTAAGA 000080
000081 AGATTTCAGC TTGTGACCTG CCCTCGGGAC TTGTGGGTGT ACAAAGCCTG TGACCCAGGA AACAAAGTCA ACGGCTCACT 000160
000161 TTGTCCCCAC CCCACCCTAC CCCGTCTCCC TCCTACTAAA TGCTGAATCT CACGAGAGAA GAAAACCAGC CACATAAAGG 000240
000241 ATTTGAAAGC TCAACTTGCT TTCCCACTCT GTTATCCCTG GAGTTGGCTT GGATTCACCC TGAAGCCTTC CCCCTCCCGG 000320
000321 GGAAAGTTGC TTCACGTTGC AGCTCAGCAG GTTTGTCCAG CTACATAGGC TCCAGAAAAC AAGAAGCAAG ACTGGAAAGC 000400
000401 TGGGGATGAT TGTACGCCCT CGCCTGAATC TTACGTGGTT CCTCCTTCTT CCACCTGGCC AGTGCAGAGC CGTGGGTGCC 000480
000481 ACGTGGCCAC TTCTGGATTG GGTTCCCCTT GGCCTGCCAC CCTGTCCTTC TGCTTTCCCA CTTTGCCAGC CAGAGTCAAT 000560
000561 TTGAGGACGC CAAGTTCTCC TCTCCATACA GAGAGCTCCT GGTCTCCTTG TAACTTGTAA CTCCTGGGCA CAGTTACAAG 000640
000641 TGCTGAATTC TTGCGAGGAT GAACTCAAGA TACAAAATAT GCTTGGCAAC TCACCCCTGA GTGGCCACAG GCACACGCAG 000720
000721 GAGTCGAACC CACCCACCTC TGCTGACAGT CATGGGTCAA GCTCAAAGTC CTGGCTGCTT CTCTGCTCAA GGTAAATTGC 000800
000801 CACAGCCTCC GTAACCTTCA GCAGCCACCA TCCTGATCAG TTAGCAGCCA TCATCAAGAC AAGACCCTTC CCCAGCATAA 000880
000881 ACATTACGGC TTGCTGAAGA CTTAGATCAT AGTTAGCATT TTTAAGCAAT CAAGTGTTTT AAAATTAAGG TATGTACATT 000960
000961 ATTTATTTAT ACATAATGCC ATCTTACACT TAATAGACTA CAGTATAGTG AAAACATAAC CTGTATATAC ACTGAGAAAC 001040
001041 CAAAATCTTC ATGTGACTTG CTTTATTGCA GTGGTCTGGA GGGCCGGCCG CAGGGTGACG GGTGGCAGCC TGGGGCTGTG 001120
001121 CAGATGTGGG TGGCTGAGAA GGGCACTAGG GTGGGGGTGG CTGGAGGAAT TTTAAGTGCT GTGATGAAAT GGGCACCCTT 001200
001201 CTCTGCCCTC CATCGCCAAG CCCTACACCT CTGCGAAGAC TGTGACACAT AAAGTCCTGT GTCAACGGTT GGGCGGGGTT 001280
001281 TCACCATGTT GGCCAGGCTG GTCTAGAACT CCTGATCTCA AGAGATCCAC CCACCTCGGC CTCCCAAAGT GCTGGGATTA 001360
001361 CCTGCATGAG CCACTGCACC TGGCTTCAGC CCTTTGTTTT ATCCAAGAGA AGGTCAAGAG CAGATAAATT GGATCTGTGC 001440
001441 CCGCAGAGAG AGCCTGCTCC AGCCTCTTTG CTACAGCCTT GAGTCTTCTG CTAAGAAAAG ACACAGAGGC AAAGAGAAAC 001520
001521 ACATAGAGAG GAGAATGCCT CGTGAAAATG GAGACCGAGA TTGGTGCAAT GTGTCCACAA GCCAGGGAAT GCCAACGTGG 001600
001601 CCAGCAACCA CCAGAAGCTG GGAGAGAGGC ATGGAACAGA GTCCTCGGAG CCTCCAGAAG GAACCAACCC TGTTGATACC 001680
001681 TTGACTGAAA ACTTCCAGCC TCCAGAACTG TGACAGAATT AATTTCTGTT ATTTAAAGCC ATTCAGTCTG TGGTAATTTG 001760
001761 TTACATCAGC CCTGAATAGC AAATACAGAT GACCCAGGTT TAAATCCTAG TTCTGCCACT TATGAGCGTG GGTACATAAC 001840
001841 TACTTTCTAG AGCCCCGGTT TCCTCATCTG TAAAAAACCT CATACGGTTA TTAAGAAGAT CAAATGAGAT ACAAACATAA 001920
001921 ATTCTTAACA GTGCTGGCAT GTTAATTGTT CAATAAATAT GAGTTATTTA CAACAATTGT GATAGTAATG AGTAACACAG 002000
002001 AGAAATGAGA ATTGACTTAA CAGAGGCTGG CTCGGCAAGC CTCTATGCCA ACAAAATTTA TTTGGAAATC AAAAGTATTT 002080
002081 ACTTCAGACT GGGCGCAGTG GCTCACACCT GTAATCCCTG CACTTGAGGT CAGGAGTTGG AAACCAGCCT GGCCAACATG 002160
002161 GTGAAACCTC ATCTTTACTA AGGGAGGAGA CCACCCCTCA TATTGTCTGC ATATGCCCAG TTTCTGCCTC CAAAGAAAGA 002240
002241 AGAAGTAAAA ACTAAAAGGC AGAAATGAAG TCCACAGGCA GACAGCCCGG TGCCACACCC TGGGCTTGGT AGTTAAAGAT 002320
002321 CGACCCCTGA CCTAATCAGT TATGTTATCT ATAGATTACA GGCATTGTAT AGAAAAGCAC TGTGAAAATC CCTGTCCTGT 002400
002401 TCTGTTCTGT TATAATTACT GGTGTATGCA GCCCCCAGTC ACGTACCCTC TACTTGCTCA ATCGATCACG ACCCTCTCAC 002480
002481 GCAGACCCCC TTAGAGTTGT GAGCCCTTAA AAGGGACAGG AATTGCTCAC TCGGGGAGCT CGGTTTTTGG AGACGTGAGT 002560
002561 CTTGCCGAAG CTCCCTTTGA GTAAGATGGA GAAGTTTTAT GAGAACCATA GTGTTGGGGG AATATAAAAA TTTTGAACAT 002640
002641 TTGCAATCAT CTGTCAGTCT TGTAATCCAG TTTCCCAAGG TTGTGACTGA GGAGGTCTGG GGTGGGTTGA CAGACCTGCA 002720
002721 GAAGGCTGGA GTCTTCTAGT TGATGAAGAA TGACACTGCA CTGCTGTTAA TAAAGCCTTT GAGTTTCTCT GCCTGCTCCC 002800
002801 CAGCCAGGTG AGTGCAGTTT GTTTTATGAC TTTCCCAGGG GTGATCATCC TCTGAGGACT GATGCAATCT TGCCTAACTC 002880
002881 CCAACAGGGT GATTAATGCC CCAGAAAGCT GAAGTCTTAC TTTATGGTGG GTCTATATTT ATCATGACTG CCCAGGAGAT 002960
002961 CTTTGCCTTG GCTTCTCTTC TCCTGATGAA ACCTGGATGT CAACTGTCCC CCTCTGCTCT GATTCTATGG CTCCATATCT 003040
003041 GAATGTAGAA CTTAGAACCT CCTCAGGTTC TTGTTTTGTT TTTTCTCTTT TTTTGAGACA GAGTCTTGCT CTGTCGCCCA 003120
003121 GGCTGGAGTG CAGTGGCGTG ATCTCGGCTC ACTGCAGCCT CTGCCTCCTG GGTTCAAGAG ATTCTCAGCC TCCAGAGTAG 003200
003201 CTGGGATTAC AGGCTCATGC CACCACATCC AGCTGATTGC ACTCCAGCTT GAGCAACAAG AGCAAAACTC TGTCTCAAAA 003280
003281 AATATATAAT AATAATAATA ATAATAAATA AAAGACTAGC CCTAAACCAT TGTGCATGTG TGTGTGTATG TGTGTGTGGC 003360
003361 CAGGTGATAG AACACACTAA TGGCTTTTCT AAGGTTCCTT GGTCCAACTT CTGGAGCTAT GGTGCAACTG GCATCCCTAG 003440
003441 AAGGGAAAAG CATAAATGCT AAGGTGGTGG AGCAACCAAC AGGAACCCAC TTTATCATGA AAAAGATGAA GAGAGGTTAA 003520
003521 ATAAACAACC CCAAATCACA CTCCTAGTCA ATAGTGGTTA TGAGTTTTGC ACTAAAGTCC AACTGATCTC CACAGTCAAA 003600
003601 GCATTTGACA AGAAGTCCTC TCATTGGTAA ATACAAAACC TGTTATTGAT TGCTGCATCA TACACTACCC CAAACAAAGT 003680
003681 GTGATAGGAT GCTAGAGAGG AAAATTTGGA ATTAGCTTTT AAAAGGAAGA GAAATGACGG TGTAACCATC TGCCAAATAC 003760
003761 ATGGAAACAA CAACAACAAA AACCTCATCA TTCACCTGGC CTGGCAAATA GGTTTGTGCA TTTTTTTTCT TTTCTGTCCA 003840
003841 CCCTGTTGTT TGTCAGAGGT TGACCAAGAA CTTGTCCAAG GGCCATTCCT GTGGTGTCAC CCAAGTGTTG TAGGTCCTTC 003920
003921 TGCACAAAAG TTCCATACCC TCCCTTCTCC TTTGGTTTTC TAATTTAAGT GTGATGAGTA GCAGCCAGCC AAGTGAAAGA 004000
004001 AAGGCCTAGG GATTTCAAAG GAAAGATACA AGGCTGGCGG CAAAAAGGAA GGGCTTTCTC CTCACTGGGC CCTCTTCAGT 004080
004081 GGCTTGAACT GTGAGACTCC TGGAGGTATC AGCGCTTGGT TCAACCCTAA AAGAAGTTGC ATCAGACATG GCAACTTTGG 004160
004161 CCTGCTTTGC TTGTATTCTC TGTGGCGAAT GGAGTATTAA TAAGTGGCTC TCTGGGGAAG TTTGCGCAGC TCATACTAGA 004240
004241 AAACAAATAG ATACGTAAAG TTCTTGAATG ATGTAGATGT GATGCCATAT CTGCTCTCCT TCCCATAATT TCAGAGAAAA 004320
004321 ATCAAGGACG ATGTGTGGTG AACATAATTC CTCATTTTTC CTTTATCCAT GAAATATTTG CTTTAAAGCA GCAGCTAAAA 004400
004401 CCACAGGTTT TAGTGAGCAG ATTATTACCT TTCTGAGAGA CACAGAGATT AAGAGAATGG TCAGTTGCTT GCCACTGAGT 004480
004481 AGGGAAAAGG GAGAAAAATT ATGATTCAAG GCATTTTCTC TGCTTCCAGT TAGCTGCTGG GGGGGACTGG ATTATGCTTC 004560
004561 TCCAATATCT GAAGGGTTGT TGAGCTGAAG GCAGTAAGAA GCAAATGCAG GAAAGCTCTC ATCTTCCCCT CTGGTTACCT 004640
004641 AAAAGCAGGA CATAGATTTA CAAAGACAAA AGGTACCCTG GCCACCTCCC TCTCCTTACA TTTGCTTAGA GGGATGAGAG 004720
004721 CCTCCTTGCT TGGGGAGGGG AAAGCTATTG GGGAGGGACA TTACTGGCCT TTTGTCTCCA CCTCCCCAGT GGCTGCTCTG 004800
004801 GTTGGGTGGA CTGAGGGTTC CCTCCTGCAA GTTCCTGCTG AGTGTGGCTG TCCTCAGGAA ACCAAGTCCC CTCTGCGGCC 004880
004881 CTACGTGAAG AGATCAGGAG TTACTCAAAT CCCAGCCATC GGAAGGAATC TTAAGCCACA TATGATTTCA GAGAAAGTTT 004960
004961 CTGCTTTATA GGGCAAAGGG GTGCCTAGGA CTGAGCCTTG TATGTGCTAA ATGCCTTGTA CTATTGAAAT GAACGAATAA 005040
005041 AGAGGTTTGT GGACAGCAAG CTATAGTTCA AACTCACATA TCCTGAGAAA GACAAGTAAT GGATTTTCCA TTTTCATCTA 005120
005121 TCAGATGGGC AAAGACCAAA AAGTTTAGTA ATCCACTGTG TTGGAGAGGG TGTGAGAAAA TACACTACCT CATACATTGC 005200
005201 TGGTGAAGCT GTGGAGACTA CCAAATGGAC TCGTCTAGAT TTCACATGCA ACGTGGCTCT GCCTTCCCTG AGCACTCTGG 005280
005281 GCCTTTCCAT GGAGACAGAA TGAATAGATA ATGGTGAGTA GGGGGGAGCT ATA
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Predicted Small Protein

Name NONHSAT107859_smProtein_2996:3199
Length 68
Molecular weight 7196.2451
Aromaticity 0.0597014925373
Instability index 80.3626865672
Isoelectric point 5.63128662109
Runs 11
Runs residual 0.0208642650621
Runs probability 0.0355221531693
Amino acid sequence MSTVPLCSDSMAPYLNVELRTSSGSCFVFSLFLRQSLALSPRLECSGVISAHCSLCLLGS
RDSQPPE
Secondary structure LLLLLLLLLLLLLLLLEEEELLLLLHHHHHHHHHHHHLLLLLEELLLEEELLLEEEELLL
LLLLLLL
PRMN -
PiMo -