NONHSAT108010
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108010 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1929 nt |
Genomic location |
chr6-:19802395..19804981 |
Exon number |
3 |
Exons |
19802395..19804141,19804402..19804509,19804906..19804981 |
Genome context |
|
Sequence |
000001 AATGACTTCC AGCTGGAGCA GCCCAGCCAG CCTGCGCGCT CACTCGCTTG CTTGCGCTGG GCTTCAGGGC GCCCGGGAAT 000080
000081 TTGCACTGTC TGTTAAAACG CGGTCATTGT TTTGCTTTCA AATCGAACTT CACGACAGTT AGCAACTTCA AGAACGCTTC 000160 000161 CAAATGGATA AATCTTTCCA GAAGATTTCT TGCTTCAAAA CAGCTGCATT TTTGGAAGAA AGTCCACAAC TGACAACTAA 000240 000241 GCAAAACCCT CCTGGTGGAT AGCATAAATC TGCTTTGTTG AAGCTGCTCA TTTGTCTGAT CTATGAGTCC AGAAGATGCA 000320 000321 AACTCCCTTC CCAGCTTATG CAAAAATACT TCCAGTAAAA ACAAGCCCTT TGGCCCTTTT CTTTTGTCAG TCCAGATTTC 000400 000401 AGCATGTTCT TCGCTTTGTT ATTCATCATT TTATGTATTT GGACCCATCC TCAAACAGAC TTTCAACCGT TTAAAGGCAA 000480 000481 GGAGGGACTC TTTCCTAAAC CTTTAATCCC CTGGCCCAGC TGAGTAGATG CACAGTGTCT TTTGATGATG GTGATATAGA 000560 000561 ATGATTAATA ACCACACAAG CCATTCGGTT GGTCAAGTCA CTGTTTATTG GCTCAAAATA ATCCTTGGTT TCTGTATGTC 000640 000641 TACAGCTCAC TTCCTAAACA GTTAAATCCG GAGAAGTCTA ATAGATAATA GTTGGTGATC ATAAATATAA ATAACCAATA 000720 000721 CATTAGAATG TGTAGTCAAA ATAGGAATAC TTGCTTTTCA CTTATTTCCC ACGGGTCGCT GCTGGTGGTA GTCAACACAA 000800 000801 ATAAAAATTT GAACTCATTT TGTTATTCAT CTAAAATGAG AAACTCGGTG AAACATTGAT TTTCTAAAAT TGCTGCATAT 000880 000881 TTAAATGTGA TTATAATTGC TTTTTAGCAT TTTAAAATTG TAACATCGAT ACCAAATGCT TAAGAATCTA AAGAATAGTC 000960 000961 TATTGGGGCT GGCCTATTCT GTGTAAAATG GTCTGTATCA TAATGGATGA CTGATTATCC CATCCACATT ATTTGGATTC 001040 001041 ACTTAATACT AGGTTTTAAC GTTAGGAGAA TAAAACCCTC AAGAAACCTA ACATAGATTT GTATATTTAG TTTTCTCCTT 001120 001121 CCTTATCATC TTCCACCAGA CTTACAGGTG TTCCACCTGC TTGTAGTTTC GGTAATAATA CCAGCTGGCG GTGGTTCCTA 001200 001201 ACTCTAGCTA CACTTTAAAA TTACCTCGTG CATTTAAAAA AAAAATGCAG TTGTTTAGGT TCTTCCCCTA GATATTTTAA 001280 001281 TTTACAAGGT TTGGGATGTG GCCTGGGCAC CGATTTTTTT AACTTTTTAT TTGAATGTAG ACTTACAGGA AGTTGCAAAG 001360 001361 ATAGTACAGA GAGGTCTGAT AGAGCCTCCA CTGTTGGTTA CATCCCGCAT AGCTAGAGCA CAATAATAAA GCCAGGACAT 001440 001441 TGACACTGAG ATAAAATGTG CCTGTGATTC TGTGTCACCT TATCCCTGAA GACTCTTGTA ATCATTACCA CAATCAAAAT 001520 001521 ACAAACTATT TCAACACCAC GAAGATCTCT CTCATACGGT CCCTTTATGG TCGTCCCTTT CTTTCCCCCA CACCATCCCT 001600 001601 AACCCTTTGC AACCATCAGT CTGTTCTCCA TTTCTATAAT TTTGTCGTTT GGGGAATGTT TTATAAATTG GTCCTCACAG 001680 001681 CTTGTGACCT TCTAAGATTA GCTCACCATC CCCCCCACCC CCCCACCCCA CCCAACTCAG CAGAATGCCC TAGAGATTTA 001760 001761 TCCAAGTTAT TGCAGGTATT TCTAGTTTGT TCCTTTCTGT TACTGAGTTC TACACTATGG GTGTAACAGT TTGTTTAATC 001840 001841 ATTCAGCATT CACCTATCAT ACATTTTGGT TCCTTCTTTT TTTGGGCGGG GGGAGTGCCT ATTACAAATA AAACTGTCTT 001920 001921 GAAAAATTG |
Predicted Small Protein
Name | NONHSAT108010_smProtein_302:505 |
Length | 68 |
Molecular weight | 7466.5513 |
Aromaticity | 0.119402985075 |
Instability index | 78.258358209 |
Isoelectric point | 9.50775146484 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0209032561974 |
Amino acid sequence | MSPEDANSLPSLCKNTSSKNKPFGPFLLSVQISACSSLCYSSFYVFGPILKQTFNRLKAR RDSFLNL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEELLEEELEEEEELHHHHHHHHHHHHH HHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLL |
PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii iiiiiii |