NONHSAT108099

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT108099

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1832 nt

Genomic location

chr6+:23438116..23439947

Exon number

1

Exons

23438116..23439947

Genome context

Sequence
000001 gaagagagag aggagagata gtgagggcca gatcagatca tgtaagatcc tttaaacctc tggtcatcac tttagtttat 000080
000081 attctcagtg agatgggaag ccatttgagg acttttaggc caaggatgga tataatctct cttaactttc aaaatgatca 000160
000161 ctttggcaac agtatggata atggactata tggcagccaa gtgtgaaagt attgaaatca attaagtcta ttgtaagtct 000240
000241 aaacaagagg taatggtcca cactgcagtg tgaacagtag agaggttgag aagtaatcag attctggaag agctgatagg 000320
000321 attttctaat gggttaaata aagatgtgag aggaagagca gaatcaggat gattctagtt ttagacttga cccactaaaa 000400
000401 gaatgaagat gcAAAAGAGA GAATAGTAGT CCTTTctttg ccaaaaatca gctctgcata gctgtgtcta ttttgttcca 000480
000481 ttgatctatg tgtccgtccc tctaccagga ccactctgtt tggattcctg tagacacaaa atcacattgg gtttgtgatt 000560
000561 tctccaacct tatcgttttc aaaattgctt aagtaattct atgtattttg cctttccata ctcattttag aatgagcttg 000640
000641 tcaaaaaatc atgctgggat tatgttggca attgcattaa atctatagat ccatttggtg aatattactg tctttactat 000720
000721 gttgattact ccaattcctg actacagtat gtctctccat ttatttaggt ctttaatttt ataaatcagc attgtttgga 000800
000801 ttttactata tacatcctat gcatgttttc ttagatttac acctaagtat ttctcttttg gaggaattat tctaaatgat 000880
000881 atttattttt actgtcagtt tttaattact cattgctaga atatagaatt ataattgtca attaagttgt gacagattaa 000960
000961 tttctttctg attcgtatgc cttttctttt ttttcatttt tctttttctt ttgccttatt gtgctgggtg gcattccagt 001040
001041 aatatgttga atatgaatgg tagaagtgga cattcttgaa ttgttcccca tcttaggaag gaagcattca ctcttccacc 001120
001121 attaggtgtg atactatgat gttatctgta ggcttttttt ttttttttcg gaaatgcttt tatgagactg acgatattct 001200
001201 cttcctcttc tagtttacag agagattgta tcatgaatgg gattaaagct tgtcaaatac ttttttctgc atcaaacagt 001280
001281 ataatcacgt gcctttgctt gttttgattt ttaatttgta gaatacttcg atttttaaaa tatggattaa gccttgcatt 001360
001361 agtggaataa gggaataaag tccacttagt tttagtgtat tactcttctt atatgttgtt agatttgatt tgctagtact 001440
001441 gtattgggaa tgtttgtgtc tatgctcatg ggggatattg ttctgtactt ttcctacggt aactgtcttt ggttttggta 001520
001521 tcagagtaat gctgacctta taatatgaac tgggagtctt cccctcctct tctgttttct gaaagaagtt gtataagatt 001600
001601 aatattagtc tttctttaaa tatttggCAT GCTTATATTT TAAAAAATCA TGTTGACAGA ATTGAGGTGT ATATGTAAAG 001680
001681 TAGAATCAGG AAGGAGGCCA CTGAAGTTAT TTTCATGAGA GATAAAGCTG TCTTGGCTAA GTAGATAATT ATAGGGATGT 001760
001761 AAATAGACAA TTATGTAACA TATATATGTA Tactgggtag cattccagta atatgtagaa tatgaatagt ag
[back to top]

Predicted Small Protein

Name NONHSAT108099_smProtein_1181:1306
Length 42
Molecular weight 4517.3619
Aromaticity 0.0731707317073
Instability index 49.8219512195
Isoelectric point 8.52081298828
Runs 8
Runs residual 0.0191530749663
Runs probability 0.033838986045
Amino acid sequence MRLTIFSSSSSLQRDCIMNGIKACQILFSASNSIITCLCLF
Secondary structure LEEEEELLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL
PiMo iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo