NONHSAT108526
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT108526 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2776 nt |
Genomic location |
chr6+:29497183..29501345 |
Exon number |
3 |
Exons |
29497183..29497361,29497726..29497820,29498829..29501345 |
Genome context |
|
Sequence |
000001 ACTGCCCAGC CTGATGGCTC CACATCTCAG GAGTAGGCTC TGATTCCTTG GGGCCCCAGG AGCCTCTCAG GAGTCTACAT 000080
000081 CCCAAGATGT TCTAACTTCC AGAGTCTCCA AGCCCATCAA GAGCAAGTTT TGCTAAAAGT GTTCTGAGAG CTTATGAAGC 000160 000161 ACATGGACAA GGAAGGGTTG TGCATCCGGC TTTCCACCTT AAACTGGTTT CTATGGTGCT TCATCGATGA GATAAGGATG 000240 000241 CATAGGAGAC CCCAGGCCAG GAGTTCCTTC AGGACACACT GTCCTAGGCC TGGGCCCTGG AGGAGGACAT GGTGATGAGG 000320 000321 CACCCTGAGG CCTCCATGGG GGAACTGAGA AGCATGCACT GTGACCTGCA CACCCAGGTG GGCTTCAGCA CCAAGTCTCC 000400 000401 TCCTGTGTCA CCCTGCGGGG CAGTAAATAG TGGGAAGTGC CCAGACCTCA CCAGCCCTGC TCCCTGGGCC TTCCTCCAGC 000480 000481 CCCTCCTCTC CCTCCTCCTC TAAGAAGCTT CTGAAACCAG GCTGCCTGAG CCTAGGGCAA AAGCTGACCT TGGGTTTACT 000560 000561 GGACATGCCT CAGAGACAAT GAGACGTGAG CAAGACTCTT CCAAGCCCCT CCCCTGTACC CTCCTGCTCT CACTCCTGAA 000640 000641 AGCCCCAGAA GGACACTGGA GGGGTCAGAT CCATCTGTGC AAGCCCACAA CCACACCTGT GAGTACCAGC AGCCCTGGAG 000720 000721 AGCAGCAGGG GGCCTTCACT CCTGAGCACC CCTCCAAGGG CCTAAAATCA GTGTCAGAGA CCCTAAGAGA ATCTAGGGAG 000800 000801 AGGGCATAGG TGAAACCCTG GCCCAGAGCC AGAATTGATT GCTCAGCTGA GTGTGGGAAC AGTCCAGCCC TGGCATGGAG 000880 000881 ATCCCCCAGA GGAGTGGAGG GTGTCTCATC CACTGTGGAG ATAAGCCCCC ATATTGCGTG GCAAAGGGGC TAGGTAACAG 000960 000961 TTAAGGCCTC ATCCATCTGA GCTCTGAATC AAGGCTAAAG CCCAGGCTAA GCAGCCCTGG GGCAAGAGTG TGAGGCAGGA 001040 001041 AGACTGAGTC AGCCTGAACC CTGGGGGCTG TCCCTGGAGT GACTTGAGCT TCCCTGACAG CTTCCCCACT CTAGGCTGCA 001120 001121 CACACACCTC GCTCTGGGAG TAGCAGCCTG CAGGAGTGTC CTCAGCATTA GACCAGGGGG ACCACACGGG GACCCTGAGG 001200 001201 ACTGCAGGGA CCCAGGTCTG TGGGGTCCAG CCTGGCAAAA GCAAGATGTT CTCAATGGAA AAGCTGACCA AATCTGCTTT 001280 001281 CCTTTCAGCC AAACCTGAGC AAGCACCCCC ACCACCCAGG CCTCTGCAGA TATCCCCCAG CATTGAGACC CTCCCCAAGG 001360 001361 GGATGGGCTG CTTCTCCCTG GCCCACAGCC CAGCTCCAGC AGCCCATGGG TATAGCCCTC CTGAAACAGG AGCCTCATCC 001440 001441 TCCCTCACCC TCACCTGGCT ATGCTGTACC CAAGGCCAAA GCCCAGAGGC ATAAGGGAGC TTCTGCAGAG CCCAGGACAG 001520 001521 CAGGCTGCTC TCTGGGGGCC CTGGGGACTC AGAGTGTGGC CAGCCCATCC CCAGCTCAGG ATAGACCACA GAGTGCTTGG 001600 001601 TGATTCCTGC ATTGGAACTC CCTCTCTAAG CTCCCCATGG ACCTGGACCT CAGAGGCCTG TGGTTTTCAC AGTAGAGCTT 001680 001681 GGAGCAGAGA TGCTAGGCCC CTATCACTTC CATATGTGTC CTGGACACCT CTAAGATCAT AGGACTGGCC TAGCCCCCAA 001760 001761 TACCAGACAC TGCCCAGCCC CCTGATAGCC CAGAGGTAGG GCCAGAGACA ACTCTCCTGC ATGTGATGCC TACAGCTGAT 001840 001841 CACTCTTGGC AGACAGTGAA CATCACGGCC CAGAAGGAGC CAGGGCAGCA CTTGGCAAGC TGCCCCAAAG CCCCAGAGAG 001920 001921 CTCCTTAGAC ATGGAAAGTC AATACTGATG GGGAAGCTGG ACACTTGGAG GCCACTGGAG GGAGGGGTGA GCATGGTGTC 002000 002001 CCCACAGCCC AGGCCACCCA GCAGCATGCC CTGCATCCAT GGTCCCAACC TGTAGGGCAG AACCCCCCTC TCAACGCACA 002080 002081 ATTCCTAGAC CCAGAGGGCC CTAGCCCAGA CTCAACCTGA GCCCTGAAAG GGAAGGGGCA CCAGGGGTGC CTTGGGGCCT 002160 002161 CCAGCAGCAG CCAAGATACA CAGGAGATGG AGCCCCCTGT GGCCCTGGCC AGAACTAGTA TTTGGCTTAA GGCGGAGCAA 002240 002241 GCCCCCTTGG AGCACTGCGT ACATACCCGG GGCCTATGTG TGCCTGGCAA GGCCAAGCTG ATGATGTTAC CAAGCTCAAA 002320 002321 CTACCACTGG CCACCTTGGT GAGGGTGGGG CAGAAACACG TGGACCAGCC ACCAACCTCA TCCATTCAAG GAAGCAGAAA 002400 002401 TGGTCAGGCT CCTGCAGGAT AAGTGGCCAC CACCAGACCA CCAATGGGGC AGAGTTCTGA GGCCCAAGCA GATGGCACTG 002480 002481 GGGCCCTGCT TCCAGGGTCC ACAATCTGCT CCAGGACACA AGACTGAAGA AAACTAAGCA AATGAGAGTC CAGGAGGCTG 002560 002561 GATCCCTCAT CTGCCATTCT TGGCAGTTGC ATTTTGTGGT CAGAAAAAGT CAGGAAACTT GGCTCTACTC ACTGCAGGAG 002640 002641 GCTCCAAGGT GGGACCAGAG CTTCCAGCAT AGATTCAACA ATGCCTAAGA ATGCCTCTTC TTGGGGAAAA GGACCCCTTC 002720 002721 CTTGGCCTCA AAGCCCCCAC TTATTTTGAT TAAAGCACAA TAAAGTCTTT GTTGTT |
Predicted Small Protein
Name | NONHSAT108526_smProtein_1460:1741 |
Length | 94 |
Molecular weight | 10585.015 |
Aromaticity | 0.10752688172 |
Instability index | 59.7569892473 |
Isoelectric point | 10.7290649414 |
Runs | 14 |
Runs residual | 0.0196136997212 |
Runs probability | 0.030850177909 |
Amino acid sequence | MLYPRPKPRGIRELLQSPGQQAALWGPWGLRVWPAHPQLRIDHRVLGDSCIGTPSLSSPW TWTSEACGFHSRAWSRDARPLSLPYVSWTPLRS |
Secondary structure | LLLLLLLLHHHHHHHLLLHHHHEEELLLLLEEELLLLLLEELLEELLLLLLLLLLLLLLL LLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |