NONHSAT108559
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108559 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3622 nt |
Genomic location |
chr6+:29866808..29870429 |
Exon number |
1 |
Exons |
29866808..29870429 |
Genome context |
|
Sequence |
000001 CATGACCTTT GGCTGGCTAG GGAGGGGATG CAATGATATA AACATTTATC CCCTGATACC TCATGTTAAA ATCTGATGCC 000080
000081 CACTGTGGGA CGTGGGGCCT AATGGCCACC ATTTGGGTCA TGGTGACCAA TCTTTTATGA ATAGAGAGAT ACTGCCCTCT 000160 000161 CTTGGGAATG AATGAATTGT TGCTTTATTA TTTTCCAAGA GAGCTAGTTG TTAAAAAGAC CCTGGCAACT TCCTACTCTC 000240 000241 TCTGTTCCTC TGTTACCATG TGTTCTCTGC ATATACCAGC TCACCTTTGT CTTCTGCCAT GAGTGGAAGC AGCCTGAGGC 000320 000321 CCTCACTAAA TGCGCAAACA TTTCCAGACA TCAGAATCTT GAGCCACATG AACCTTGTTT ATATAAATTA GTCAGTCTCA 000400 000401 GACATTTCTT TATAGCAACA CAAAATGGAA AAAGATAACA CTCGCATCAC AGGTATGTGT CTCTGGCAGC TAGCCACCGT 000480 000481 TCTTAAGATA TCCAGGATCC ACTCAGCCAA GAGTCTTCTC ATCAGTACTC TAAAGACACT TATCACTCAA GAGAGTCTAA 000560 000561 GGTTTTTAGG AGAAACCAGG GACAAAGTCT AAATGTTTTT GTGATAACTC AGATTGCCCA CTTTTCTTTG ACCACATATC 000640 000641 TTTTACAGGA AAAAGGATTG TAACAGTAAA GAGGTATTGG CATATTATCA GAGTCTCATC CATTCATTCA AAATTAGGCC 000720 000721 AGTTTATCAT CCTCTTGTAT GAATATGTCT CCCAGAATGA AATCACTCAG CTTTGCTGAC AACACTCAAT CTTACCAGGT 000800 000801 TCCAAAAACA AGAATGGTCT CAGGGACATA CAGCTTCACT CTTTTAGGCA TCCAGTATAA TTGACCTAAG TGACAATATC 000880 000881 TTCTCTTGCT CACACCACCT TTGAGGAGTT AAGCTAATAT TGAATTTTTC TCATTATATA ACCCTTTGAT TTATTCACTT 000960 000961 GCCCTCAGCC ACTATTCCTC CCTCTGTCCC TTTATATCAG TTGTTTCCAG GTTTGGGAGT GACATTAGGT TTGTCTGCTG 001040 001041 GGCTGGCCTA GACTGCAGGC AGCAATAGTA TTCTAGCATG TCTTCCCTCA GTCTAGTCTT GATCATAGAG GGTAGGTTAT 001120 001121 ATAGGTAAGG AACTAGTGGG GGCTATCAAG ACCACCAGGC TATATAACTC TACTTACTGT TAATCCTAAC TTTTCCAGAT 001200 001201 GAAATGAATA CTTGAGAATT CTTACATAAA GGTATAAAAA TATAGTTATG GTTTTTGGCT TAGGGATAAT TCCTGTTTCT 001280 001281 GGCACTTTTA TTTACATCCC TATTCCTGGT ACTATGGCAT AACATATGAA AAAATAAATT TGAGGTGAAG TGTAGTCTTT 001360 001361 ATTCCAGCAT CCTCTCCTCT TCAGAAGAAT TGTATGTATC GTCATAACAG CATCGTCCTG ATCCATCAGG TAAAAGAGAG 001440 001441 GATGCTACCT AGTGGAGTTA TTCTTGCAGC CCCACTCATG TTGACAGCGA GCACATTCAT GAAGATATAA AAGCCAGTCC 001520 001521 TTCATGTTTA TATTGCCCAA CAATTAGATT GGCAGTTTTT AGACAAACAA TGTTTCAATT GACCATTTCA ATTTTCTATC 001600 001601 AAATTTTCCC CTGAGGAGGA CATGTCCCTC TGCATTGTTG GCCATTTGAG GCTGTAAAGT GTGTTTTCTT GTGTAAAGAA 001680 001681 GTGTGACTCG GCAGTCCAAA TTGGTGCAAT CTCTTCTTTT CTGGTTCTTG TATAGCCCTT GAAGCATTGA CATCTACCCC 001760 001761 TGGTTGAGCA TAGCCCAATC CAGAGTCAGT GATTTTCCTG TCAAGATCCA TTGGCAGCTC CTTTGGGGTT GCTGGCATCA 001840 001841 TTCTGGCTTG CCAGGTATTA TGATCAAAGC CTTCCCACTA GAGAATCTGT CACATCTCCA TCTGCTGCCT CTGTCTGTTT 001920 001921 TCTTGACCAA CAGTGAAAAA AGAGATTATG AGAAATAAGA TAAATTACCA AAATTGTGAA CAAAAGAGAG ATTATCACTA 002000 002001 ATGACCCTTA GGAAGTTAAA AAACATTATA AGTGAATACT CTGAAAAACC TGAAGCCAAT AAGTTAGACC ACTTGGATAA 002080 002081 AAAGGACCAA TTCGTGCAGA GATAGAAATT GCCAAAACTG ACCCAAATTA ACTGGAAAAC CTGAAGAGAA CTGTGAACTA 002160 002161 AGTCAGAAAT TGAAAAACCT TCTCAAAAAG AAATGCCAAA GCCCAGATAT CTTCACTGGT GAATTCTATC AAATATTTTG 002240 002241 AAAGCTCTTT CAGACAAGAA GAGAGGAGGG AAGACTTTCC AGCCCATTTA CAGAACTGGC ATTACCCTCA TATCAAAGTC 002320 002321 ACAGCAAGAC TCACAGGAAA AGAGTGCCAT ACACCAGTGT CACCAATAAA CATAAATGAA AACATCCTTA ACAAACATTG 002400 002401 GCAGATAATA CAAAGCCACA TAAAAAAGGA TTACACTCCA TGACCAATGG GATTCATCCC AGGAACATAT GGTTGGATTA 002480 002481 ACATTTGAAA ATCAGTTCAT GGAATGCACT GTATTAATGG AAAAAAAGAC ATAATTATCT CAAAAGATGC AGGAGAAACA 002560 002561 GTTGACAAAA ATGTTAACAT CACTCATGTT CATAAGTTTC AACAAAATAG GAATGGAGGA GACCTTCTTC ACTCTGATAA 002640 002641 AGGGCGTCTA TAAAAAACCC ACAGCTAAAA TCAAACTTAA TGAAGAAAGA CTGAAGACTG AATGCTTTTC TCCTAAGATG 002720 002721 GGGATCAATG CAAGGATGTC CAATCCCACC ACTTTTATTT AATATTATAC TGGAGATTGT AGCCAGTGCA ATAAGGCAGA 002800 002801 AAATTAAAAA TTAAAGGCAT CCAGATAAAA AGGAAAACAT ACAATTCTAT TCACAGATAA CATGACCCTG TCTGTAGAAT 002880 002881 TCACAAGCAG ATAAAAACTG GCTAGCACTA ATAAATGAAT CCAGAAGGGC CCATAGGATA TCAAATCAAT ATAAAAATTA 002960 002961 ATTATTAACA TATTTCTCTA TAGAAGCAAT GAAAATCTCA ACTTTCCTAT CACAGTAGTT ACCAGAAGAG CGAAATAGGA 003040 003041 ATAAATTTAG GAAGACAGCA GTGTTTGTTC ACTGAAAATA AAAAAACATT CCTCAGAGAA ATTAAAGGTC TAAATAAATG 003120 003121 GAGAGATGCG AGTTGGAAAG CTCGATAATA CTGTTAAGAT GGCAGTTCTC CCCCAGTAGA TCTATAGGTT CAACACAATC 003200 003201 CCTATCAAAA TCCCAGCAGG GATTTTATAG AAAATTGACA AAATAGGCCG GGCGCGGTGG CTCATGCCGG TAATCCCAGC 003280 003281 ACTTTGGGAG GCTGAGGCGG GCGGATCATG AGATCAGGAG ATCCAGACCA TCCTGGCTAA CACGGTGAAA CCCCGTCTCT 003360 003361 ACTAAAAATA CAAAAAATTA GCCGGGCGTG GTGGCAGGCT CCTCGGGAGG CTGAGGCAGA AAAATGGCAT GAACCCGGTA 003440 003441 GGCAGAAGTT GCAGTGAGCG GAGATCGTGC CACTGCACTC CAGCCTGGGT GACAGAGCGA GACTCCGTCT CAAAAAAAAA 003520 003521 AAAAAAAAAA AAGAAAAGAA AAAAAGAAAA GAAAATTGAC AAAATAATCC TAAAAATGTA TATGAAAATG CAGAGGATGC 003600 003601 AGAAGGGCCA ACACAAATTT GG |
Predicted Small Protein
Name | NONHSAT108559_smProtein_2546:2761 |
Length | 72 |
Molecular weight | 8254.8153 |
Aromaticity | 0.0985915492958 |
Instability index | 49.2 |
Isoelectric point | 9.77935791016 |
Runs | 12 |
Runs residual | 0.0204595997035 |
Runs probability | 0.0295736913384 |
Amino acid sequence | MQEKQLTKMLTSLMFISFNKIGMEETFFTLIKGVYKKPTAKIKLNEERLKTECFSPKMGI NARMSNPTTFI |
Secondary structure | LLHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHLEEELLLEEEELLHHHHEEEELLLLLLL LLLLLLLLLLL |
PRMN | - |
PiMo | - |