NONHSAT108618
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108618 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2064 nt |
Genomic location |
chr6-:30255386..30282117 |
Exon number |
3 |
Exons |
30255386..30257271,30263909..30264014,30282046..30282117 |
Genome context |
|
Sequence |
000001 CAAAGGCAGC GGTCCTGTGA ATTCTATGCT CTAGCTTGGG TTAAGGGATT TGGAATTGCA CTTGTTTCAG AGagctccct 000080
000081 ctttgcccac tagcagggca ttagctggtg ctgaagacag tggctgcttg gcgagcctgg atctccaagt gaccccctca 000160 000161 gcaactcctg atgaacagGG ACTTGCACTT AGGAATCTGT TACAGTGAGC ACAGAAGCAG ACCTGTGGGC TCATAGTCTT 000240 000241 CACCCCCCAC CCATATATAC AAGATGAACA GAGTGGAGGT TAAACAACTT GACTAAACAA CACAGTTCAT GGTAAAGCCC 000320 000321 AAGACTGTAC CTGCCCATCC ACTGCCTTTT CCATGTATCC TGGAACTGAG CATAGACCTC TTCCCAGGCA GAGCTGACAG 000400 000401 CAAGTAAAGG AGATCATAAT CAGGGGACCA AACAACTTTG TCTAAAGTGT GAATGTCACC TAAGGAGAAG CTGTGAGATC 000480 000481 AGAAGGGTGG GGCAGAGGAG CAGACACCAT GAGGGAGAGT CCTTGGGGGT ACATCTGCCA GACTGACACT GTCTGGCCTG 000560 000561 GGCAGTGGAG GGGCTAGCAG GAACCACAGG TACTGGTGGT GTGGCTACTA CCGTTACAAC TGCCTGTGCT TGGACATGGA 000640 000641 CCCTCTGCAA TATGCGGCAG TTTCATTCAT TGCCCCCTAC ATTCTACACC AAGTAGAAAT GGAAGGCAAT TGGATACTTC 000720 000721 ACAGACAAGA TCTAAGTGGA GAAGGAATGC GTCCTGTGGC TGCAGAGATC CTTGGAGCTT GGAGGGGAGA GCTTGAGCCC 000800 000801 CACTGATGAT GACCTCCCAC AGCTCGCCAA CTCAGCCCTC CCTAAGTCCC CATCGGGGGC CAATTCTCAC TCTGGGGTTG 000880 000881 GGGGGACTCC ACCATAGCTC ATCCATCATA GGGATGTTGG TATCTACTGT GGGTTGGGTA GGGCCGATGT GCTGAGGATG 000960 000961 GCTCCCCCAC AAGCAAGAGA TGTGGATTTG GGGAGCTTCC CATCTTgtgt tgaaggaaca taactcagaa taataagagc 001040 001041 caactataac aaacccacag ccaacatcat actgaatggg caaaagctgc aggcattccc cttgaaaagt ggcacaggat 001120 001121 aaggaagccc tttctcacca ctcctattca atatagtgtt gaaagtcctg atcacagcag tcaggcaaca gaaataataa 001200 001201 agggcatcca aataggaaga gaggaagtca aactatcctt gtttgcagac agtatgattc tatatctaga aaaccccata 001280 001281 gcctcagccc aaaaggtcct tcatctgata atttcagcaa agtttcagga gacaaaatca gtgtacaaaa atcactaaca 001360 001361 ttcctataca cagtcgccaa gccaagagcc aaatcaggag cacaatccca ttcataattg ccacaaaaaa gaataaaata 001440 001441 cccaggaatg cagctaacca aggaagtaaa ggatctctac aatgagaatc acaaacgctg ctcaaagaaa tcagagatga 001520 001521 cacaaacaaa tggaaaaact ttccatgctc atggctagga agaatcaata tcattaaagt ggccatacta cccaaagcaa 001600 001601 tttatagatt caatgctatt cctatcaaac tatcaattac atttttcaca gaactagaaa aaacttaaaa ttcatatgga 001680 001681 accaaaaagc ctgagtagtc aaggcaatcc taaacaaaaa gaacaaaggt ggaggcatca cattacctaa cttcaaacta 001760 001761 cagggctacc atgaccaaaa cagcatggta ctggtacaaa agcagacaca cagaccagtg ggacagaata gagagcccaa 001840 001841 aaataaggcc acaaacctac agccatctga tcttcaacaa agttgacaaa aacaagcaat ggggaaaggt ctccctattc 001920 001921 aataaatggt gctgggataa ctggctggcc atatgcagaa gatcgtaact ggaccccttt tactatgtac aaaaattaag 002000 002001 atggtttaaa gagttaaaac ccaaaattat aaaaatcctg aagataactt aggcaatacc attc |
Predicted Small Protein
Name | NONHSAT108618_smProtein_635:805 |
Length | 57 |
Molecular weight | 6344.1756 |
Aromaticity | 0.0892857142857 |
Instability index | 41.1321428571 |
Isoelectric point | 4.80377197266 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0439346909936 |
Amino acid sequence | MDPLQYAAVSFIAPYILHQVEMEGNWILHRQDLSGEGMRPVAAEILGAWRGELEPH |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLLHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |